Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0468
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_633| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   1.1  
SB_36603| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_6551| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      29   4.6  
SB_1946| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  
SB_14338| Best HMM Match : Spore_permease (HMM E-Value=0.75)           29   4.6  
SB_39354| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_50267| Best HMM Match : Voltage_CLC (HMM E-Value=6.9e-31)           28   8.0  

>SB_633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 200

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -2

Query: 590 DSKFKCNILFIFNCNSIYGQTKYNIPTYVYNEESQNCDLRKTQFAHLSV 444
           D  F C   FI +C ++YG    +IP  V   +    DL+ ++ +++ V
Sbjct: 140 DPAFPCEKQFIEHCQNLYGYASVHIPKCVVQSDLSVKDLKLSEGSNILV 188


>SB_36603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = -2

Query: 314 ELKLNRRLVTIERFDSGLCVAPEQQNPTRCQNLHIHRFKKTIKEHMCNKAYY 159
           +L L+ R+ T++ F+ G+   P    P +   LH+      + EH+  ++ Y
Sbjct: 2   KLVLDNRVYTLQEFEEGMIHHPHLGAPEQRLALHVLNSMPVVPEHVETRSLY 53


>SB_6551| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 330

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -2

Query: 320 KYELKLNRRLVT---IERFDSGLCVAPEQQNPTRCQNLHIHRFKKTIKEHMCNKAY 162
           KY L ++ ++ +      F  G+C    + + T C++  IH   +  K H+CNKA+
Sbjct: 173 KYTLAIHMKMPSHTGTRPFVCGVCGKGFRLSSTLCRHKIIHTTDRPHKCHICNKAF 228


>SB_1946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 672

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = +3

Query: 372 LKYIQL*KMQILEVCNYVNIAMVIYREVSELSFPQVAIL*FFIIYICRYVILSLAINTVT 551
           LK + +   ++ +    V IA+   +++  + F Q  IL  F  ++C +V  S  +  VT
Sbjct: 352 LKSLDMVNNELGQSMEQVLIALKSCQQLQSVRFKQEIILPRFCTHLCSFVRHSRTLTNVT 411

Query: 552 IKN 560
           I+N
Sbjct: 412 IEN 414


>SB_14338| Best HMM Match : Spore_permease (HMM E-Value=0.75)
          Length = 367

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +3

Query: 396 MQILEVCNYVNIAMVIYREVSELSFPQVAIL*FFIIYICRYVILSLAINTVTI 554
           + I+ VC   N+++ I   +       V++    II +CR   +S++I ++ I
Sbjct: 87  LSIIIVCRLTNVSVCILSTIIVCRLTNVSVCILSIIIVCRLTKMSVSILSIII 139


>SB_39354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -2

Query: 290 VTIERFDSGLCVAPEQQNPTRCQNLHIHRFKKTIKEHM 177
           V I R ++GL +   QQN TRC N++  ++   IK HM
Sbjct: 43  VIISRAENGLSL---QQNSTRCPNMYTPKY---IKPHM 74


>SB_50267| Best HMM Match : Voltage_CLC (HMM E-Value=6.9e-31)
          Length = 347

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +3

Query: 444 YREVSELSF--PQVAIL*FFIIYICRYVILSLAINTVTIKNKQNITFEFGIWHF*MIAHW 617
           Y  +  L+F  P+ +I   F + +   V ++L++  + ++   NIT+   +    MIA W
Sbjct: 194 YSSMGTLTFSTPEESIKNLFHLPLGGVVRMTLSLTVILMEATSNITYGLPMMLVLMIAKW 253

Query: 618 VFSFWRQ 638
           V  F+ +
Sbjct: 254 VGDFFNE 260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,731,023
Number of Sequences: 59808
Number of extensions: 350042
Number of successful extensions: 770
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)