Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0467
         (665 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    23   1.7  
DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory pro...    21   6.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.9  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    21   6.9  
AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical pro...    21   6.9  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   6.9  

>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 27  LGTHEKSFGNNKTN-ISKILLTQT*IDDLSIKVNQSSTTNYCTCFSEVN 170
           L T      NN+ + + K+ +T+  +  L   + QSS+  +CT   E N
Sbjct: 140 LETRPNQSDNNQLDALVKVEMTRVSLLQLIKSLRQSSSLEHCTLIGEDN 188


>DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory
           protein 2 protein.
          Length = 122

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 478 PRIHSNLSIGLSRKLKKLFLKYLHCL 401
           P  + N+ I      K+LF  YL CL
Sbjct: 22  PTKYDNVDIDAILHNKRLFDNYLQCL 47


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 51  GNNKTNISKILLTQT*IDDLSIKVNQSSTTNYCTC 155
           G+N+  I + +L    +  LSIK  + S +   TC
Sbjct: 841 GDNRYTIREEILANGVLSGLSIKRTERSDSALFTC 875


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 596 WCHRIISICKHHNV 555
           W H+I  IC+ H +
Sbjct: 109 WLHQICHICELHTI 122


>AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical
           protein protein.
          Length = 122

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 478 PRIHSNLSIGLSRKLKKLFLKYLHCL 401
           P  + N+ I      K+LF  YL CL
Sbjct: 22  PTKYDNVDIDAILHNKRLFDNYLQCL 47


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +3

Query: 480 IACCNPAPVPEARETGSCLKVGVG 551
           I+C    P PE    G    VG G
Sbjct: 31  ISCLKTTPPPEEDNRGCAASVGEG 54


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,656
Number of Sequences: 336
Number of extensions: 3551
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)