Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0467
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    28   1.4  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    27   3.2  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    26   5.6  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.6  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   7.4  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    25   9.8  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   9.8  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    25   9.8  

>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 512 FGHWCGITTRYTTDSFKSK 456
           FGHWCG  +R   D+F  K
Sbjct: 193 FGHWCGSGSRDAIDTFDLK 211


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -2

Query: 613 RTHDLPGVTGLSASVSIIT*IPTPTLRHEPVS 518
           +T D+      + S+  +T  P P ++H P+S
Sbjct: 228 QTEDIINYLSTARSLEFVTKFPVPNIKHAPIS 259


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 471 IRGIACCNPAPVPEARETGSCLKVGVGIHVMMLTD 575
           ++ I+     P P  R   +C K+G+  H+M + D
Sbjct: 8   LKEISVIQATPKPTTRSFANCCKMGILQHLMHILD 42


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 480 IACCNPAPVPEARETGSCLK 539
           I+C  P+P PE   TG  LK
Sbjct: 340 ISCLKPSPPPEVHLTGEILK 359


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 484 AIPRIHSNLSIGLSRKLKKLFLKYL 410
           AI  +H NLS G S +LKKL  + L
Sbjct: 504 AIHSLHGNLSPGKSAELKKLHKRSL 528


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -3

Query: 654 NPCFV--ILYCVIWTYELMIYLVSQDYQ 577
           N C++   L C+I T+EL  Y +S  Y+
Sbjct: 286 NSCYMNSALQCMIHTHELTKYFLSDSYE 313


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 269 VSDFFNPSLIKSEFYLFSDAQSLSKIVTT 183
           V+D+FN S   +E+Y    +Q+ SK++ T
Sbjct: 224 VNDYFNTSYAPAEYY---GSQTASKVIVT 249


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 66  NISKILLTQT*IDDLSIKVNQSSTTNYCTCFSEVNFHENCSY 191
           N+SK L     +DD+SIK  + S   +    S V  +   SY
Sbjct: 194 NLSKYLCFTKNLDDISIKAEKPSAITFANA-SAVQIYRTRSY 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,695,443
Number of Sequences: 5004
Number of extensions: 54181
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)