Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0467
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24679| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_24679| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 279 LIVVWANYDFRYC*MNLWYRITLNMSDFIFLKCCVGRFA 395
           LI +W   D R   +NLW RIT      I +     RF+
Sbjct: 288 LIYIWKMQDVRQACLNLWRRITCRADRVIAINIEATRFS 326


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
 Frame = +3

Query: 15   TGQSLGTHEKSFGNNKTNISKILLTQT*IDDLSIK-------VNQSSTTNY----CTCFS 161
            TG++L   +  F  ++  + K+LL  T +D+ SI         N++    Y    C C +
Sbjct: 912  TGKALKEVQTIFNKSRPLVPKVLLMITNVDECSIVPSKCGDIPNKNCVNVYGGFECVCVN 971

Query: 162  EVNFHENCSYDF 197
            +  F ENC Y F
Sbjct: 972  D-TFGENCEYTF 982


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,330,012
Number of Sequences: 59808
Number of extensions: 398167
Number of successful extensions: 817
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)