BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0467 (665 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g04420.1 68416.m00468 no apical meristem (NAM) family protein... 32 0.30 At1g05830.1 68414.m00610 trithorax protein, putative / PHD finge... 31 0.91 At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family... 29 2.1 At4g18425.1 68417.m02734 expressed protein contains Pfam profile... 28 4.9 At3g09060.1 68416.m01065 pentatricopeptide (PPR) repeat-containi... 28 4.9 At1g72250.1 68414.m08353 kinesin motor protein-related 28 4.9 At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 27 8.5 >At3g04420.1 68416.m00468 no apical meristem (NAM) family protein similar to NAC1 (GI:7716952) {Medicago truncatula}; contains Pfam PF02365 : No apical meristem (NAM) protein Length = 342 Score = 32.3 bits (70), Expect = 0.30 Identities = 18/56 (32%), Positives = 26/56 (46%) Frame = -2 Query: 574 SVSIIT*IPTPTLRHEPVSRASGTGAGLQHAIPRIHSNLSIGLSRKLKKLFLKYLH 407 S ++IT I TP P A GTGAG Q G ++ ++F+K +H Sbjct: 279 SQALITSIDTPEKIKSPYDDAQGTGAGGQKLGQETREKKRAGFFHRMIQIFVKKIH 334 >At1g05830.1 68414.m00610 trithorax protein, putative / PHD finger family protein / SET domain-containing protein similar to trithorax-like protein 1 [Arabidopsis thaliana] GI:12659210; contains Pfam domain, PF00628: PHD-finger and PF00856: SET domain Length = 1056 Score = 30.7 bits (66), Expect = 0.91 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -1 Query: 593 CHRIISICKHHNVNTNTHLET 531 C R++S CK H +N HLET Sbjct: 778 CIRLLSFCKRHRQTSNYHLET 798 >At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family protein Length = 1332 Score = 29.5 bits (63), Expect = 2.1 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +3 Query: 492 NPAPVPEARETGSCLKVGVGIHVMMLTDADNPVTPGR 602 N V EAR+ G K+ +G + T NPV PGR Sbjct: 537 NKLGVKEARDAGKS-KISLGERLFSYTQEPNPVKPGR 572 >At4g18425.1 68417.m02734 expressed protein contains Pfam profile PF05078: Protein of unknown function (DUF679) Length = 213 Score = 28.3 bits (60), Expect = 4.9 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = +3 Query: 417 FKNSFLS-FRLKPILRFE*IRGIACCNPAPVPEARETGSCLKVGVGIHVMML 569 F ++F+S F ++ F+ + C P+P EA E + L VGVG+ ML Sbjct: 145 FVHAFMSLFVFGAVVLFD-RNAVNCFFPSPSAEALEVLTALPVGVGVFSSML 195 >At3g09060.1 68416.m01065 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 687 Score = 28.3 bits (60), Expect = 4.9 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = -3 Query: 516 GLRALVRDYNTLYHGFIQI*VLV*VESLKNYF 421 G +R YNTL + F++ V VESL YF Sbjct: 109 GCEPAIRSYNTLLNAFVEAKQWVKVESLFAYF 140 >At1g72250.1 68414.m08353 kinesin motor protein-related Length = 1195 Score = 28.3 bits (60), Expect = 4.9 Identities = 12/38 (31%), Positives = 24/38 (63%) Frame = -1 Query: 395 SKSAHTTFKKNKITHV*RNSIP*VHLTIAKIVIRPHNN 282 +KS+H F+ +K+TH+ ++S+ T+ + I P+ N Sbjct: 762 NKSSHIPFRNSKLTHLLQDSLGGDSKTLMFVQISPNEN 799 >At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase family protein / zinc finger (MYND type) family protein similar to ubiquitin-specific protease 15 (UBP15) [Arabidopsis thaliana] GI:11993475; contains Pfam profiles PF00443: Ubiquitin carboxyl-terminal hydrolase, PF01753: MYND finger Length = 631 Score = 27.5 bits (58), Expect = 8.5 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%) Frame = -3 Query: 654 NPCF--VILYCVIWTYELMIYLVSQDYQ 577 N CF VIL C+ WT L+ YL+ + ++ Sbjct: 175 NSCFANVILQCLSWTRPLVAYLLEKGHK 202 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,538,696 Number of Sequences: 28952 Number of extensions: 265569 Number of successful extensions: 507 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 494 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 507 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1403159472 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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