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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0467
         (665 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04420.1 68416.m00468 no apical meristem (NAM) family protein...    32   0.30 
At1g05830.1 68414.m00610 trithorax protein, putative / PHD finge...    31   0.91 
At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family...    29   2.1  
At4g18425.1 68417.m02734 expressed protein contains Pfam profile...    28   4.9  
At3g09060.1 68416.m01065 pentatricopeptide (PPR) repeat-containi...    28   4.9  
At1g72250.1 68414.m08353 kinesin motor protein-related                 28   4.9  
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f...    27   8.5  

>At3g04420.1 68416.m00468 no apical meristem (NAM) family protein
           similar to  NAC1 (GI:7716952) {Medicago truncatula};
           contains Pfam PF02365 : No apical meristem (NAM) protein
          Length = 342

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -2

Query: 574 SVSIIT*IPTPTLRHEPVSRASGTGAGLQHAIPRIHSNLSIGLSRKLKKLFLKYLH 407
           S ++IT I TP     P   A GTGAG Q            G   ++ ++F+K +H
Sbjct: 279 SQALITSIDTPEKIKSPYDDAQGTGAGGQKLGQETREKKRAGFFHRMIQIFVKKIH 334


>At1g05830.1 68414.m00610 trithorax protein, putative / PHD finger
           family protein / SET domain-containing protein similar
           to trithorax-like protein 1 [Arabidopsis thaliana]
           GI:12659210; contains Pfam domain, PF00628: PHD-finger
           and PF00856: SET domain
          Length = 1056

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 593 CHRIISICKHHNVNTNTHLET 531
           C R++S CK H   +N HLET
Sbjct: 778 CIRLLSFCKRHRQTSNYHLET 798


>At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family
           protein
          Length = 1332

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 492 NPAPVPEARETGSCLKVGVGIHVMMLTDADNPVTPGR 602
           N   V EAR+ G   K+ +G  +   T   NPV PGR
Sbjct: 537 NKLGVKEARDAGKS-KISLGERLFSYTQEPNPVKPGR 572


>At4g18425.1 68417.m02734 expressed protein contains Pfam profile
           PF05078: Protein of unknown function (DUF679)
          Length = 213

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 417 FKNSFLS-FRLKPILRFE*IRGIACCNPAPVPEARETGSCLKVGVGIHVMML 569
           F ++F+S F    ++ F+    + C  P+P  EA E  + L VGVG+   ML
Sbjct: 145 FVHAFMSLFVFGAVVLFD-RNAVNCFFPSPSAEALEVLTALPVGVGVFSSML 195


>At3g09060.1 68416.m01065 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 687

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 516 GLRALVRDYNTLYHGFIQI*VLV*VESLKNYF 421
           G    +R YNTL + F++    V VESL  YF
Sbjct: 109 GCEPAIRSYNTLLNAFVEAKQWVKVESLFAYF 140


>At1g72250.1 68414.m08353 kinesin motor protein-related
          Length = 1195

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = -1

Query: 395 SKSAHTTFKKNKITHV*RNSIP*VHLTIAKIVIRPHNN 282
           +KS+H  F+ +K+TH+ ++S+     T+  + I P+ N
Sbjct: 762 NKSSHIPFRNSKLTHLLQDSLGGDSKTLMFVQISPNEN 799


>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
           family protein / zinc finger (MYND type) family protein
           similar to ubiquitin-specific protease 15 (UBP15)
           [Arabidopsis thaliana] GI:11993475; contains Pfam
           profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
           PF01753: MYND finger
          Length = 631

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 654 NPCF--VILYCVIWTYELMIYLVSQDYQ 577
           N CF  VIL C+ WT  L+ YL+ + ++
Sbjct: 175 NSCFANVILQCLSWTRPLVAYLLEKGHK 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,538,696
Number of Sequences: 28952
Number of extensions: 265569
Number of successful extensions: 507
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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