Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0465
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    60   3e-10
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    35   0.012
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    32   0.088
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    29   0.82 
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    29   0.82 
SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ...    28   1.1  
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    28   1.4  
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    28   1.4  
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...    27   1.9  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    27   3.3  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   5.8  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 29/53 (54%), Positives = 37/53 (69%)
 Frame = -2

Query: 469 MDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRF 311
           MDE+  V ++ R H EEAMK ARRSVSD ++R+YE +A  L  SRG  T F+F
Sbjct: 742 MDEDASVSQVQRHHVEEAMKMARRSVSDAEVRRYEAYAHQLLTSRGL-TGFQF 793



 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 27/63 (42%), Positives = 36/63 (57%)
 Frame = -3

Query: 675 AILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIEAEIHREGVAS 496
           +IL+  LR  P+A+DVDL  +AK T G        + QRA KLAI+ +IE +I RE    
Sbjct: 674 SILQTQLRHTPVAEDVDLRAVAKATHGFSGADLEFVVQRAVKLAIKDSIEEDIKRENETG 733

Query: 495 SKP 487
             P
Sbjct: 734 EAP 736



 Score = 33.5 bits (73), Expect = 0.029
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -3

Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIE 526
           ILR + + + +A DVDL  IA  T G V      +C  A    IR+ ++
Sbjct: 400 ILRIHTKNMKLADDVDLEQIAAETHGYVGSDLASLCSEAAMQQIREKMD 448


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = -3

Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIEAE 520
           I++    K+  A+DVDL  IA+ T+G        +CQ A  +A+ + +EA+
Sbjct: 722 IVKIQAEKMKFAEDVDLDLIAEKTEGCSGAEVVALCQEAGLIAMHEDLEAK 772


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 31.9 bits (69), Expect = 0.088
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = -3

Query: 675 AILRANLRKLPIAKDVDLSYIAKVTQG 595
           AIL  + R +P+ KDVDLS IA+ T G
Sbjct: 445 AILLQHTRHVPLGKDVDLSIIARGTSG 471


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 451 VPEISRAHFEEAMKFARRSVSDNDIRKYE 365
           +P IS  HF+ +++  R SVS   I +YE
Sbjct: 622 IPPISLNHFKASLRTIRPSVSQEGIHRYE 650


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 457 DPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQ 353
           +P+  ++ A FE A K  + SVSD D +KY+  A+
Sbjct: 735 EPI-RVTNADFELAFKNIKPSVSDRDRQKYQRLAK 768


>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 264

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 461 LVHVHNGSGGLLLATPSRWISASMAWRMASLQARW 565
           ++HV N    +++ +P   +   +AWR+   Q  W
Sbjct: 38  ILHVLNADAHVIVVSPKAGLCKEVAWRIQEKQVEW 72


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQ 535
           ILR + R + + + +DL  IA+   G+     + +C  A   A+R+
Sbjct: 325 ILRIHSRSMNLTRGIDLKSIAEKMNGASGAELKGVCTEAGMFALRE 370


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -3

Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIEAEIHRE 508
           ILR + RK+ I  D++   +A+ T        + +C  A  +A+RQ  + +I+ E
Sbjct: 364 ILRIHSRKMAIDDDINWEELARSTDEYNGAMLKSVCVEAGMIALRQG-DTKINHE 417


>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIR 538
           ILR + + + I KD+    IA++         R +C  A   AIR
Sbjct: 358 ILRIHAKSMAIDKDIRWELIARLCPSQTGAELRSVCTEAGMFAIR 402


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 491  LLLATPSRWISASMAWR-MASLQ 556
            L+  TPS+W S S  WR M S+Q
Sbjct: 1462 LIFCTPSQWDSLSKRWRSMRSIQ 1484


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -2

Query: 193 GASPPSR*TRTNVLSVCPACRP-TTPTWRLAPAG 95
           G +   R   TN    C  C+  TTP WR +P G
Sbjct: 619 GDANTRRANATNPTPTCTNCQTRTTPLWRRSPDG 652


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,010
Number of Sequences: 5004
Number of extensions: 51695
Number of successful extensions: 152
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)