Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0465
(677 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45627| Best HMM Match : AAA (HMM E-Value=0) 107 6e-24
SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_19460| Best HMM Match : AAA (HMM E-Value=0) 29 4.6
SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08) 29 4.6
SB_2354| Best HMM Match : GRP (HMM E-Value=3.9) 29 4.6
SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_12879| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 28 8.0
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 28 8.0
>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
Length = 628
Score = 107 bits (258), Expect = 6e-24
Identities = 57/96 (59%), Positives = 64/96 (66%)
Frame = -2
Query: 595 FSGADLTEDMPASLQAGHSPGHRGGDPXXXXXXXXXXXAVMDMDEEDPVPEISRAHFEEA 416
FSGADLTE + + D M++++EDPVPEI + HFEEA
Sbjct: 498 FSGADLTEICQRACKLAIREAIET-DINREKQRVDNPDLDMEVEDEDPVPEIRKDHFEEA 556
Query: 415 MKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFP 308
MKFARRSVSDNDIRKYEMFAQTLQQSRGFG NFRFP
Sbjct: 557 MKFARRSVSDNDIRKYEMFAQTLQQSRGFGGNFRFP 592
Score = 61.3 bits (142), Expect = 7e-10
Identities = 31/58 (53%), Positives = 37/58 (63%)
Frame = -3
Query: 648 LPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIEAEIHREGVASSKPPLPL 475
LP DVDL Y+AKVT G +ICQRACKLAIR+AIE +I+RE P L +
Sbjct: 480 LPDDGDVDLDYVAKVTHGFSGADLTEICQRACKLAIREAIETDINREKQRVDNPDLDM 537
>SB_37200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 908
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/48 (33%), Positives = 33/48 (68%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAI 529
ILRA+ + + ++ DVDL+++A++T G V +CQ+A A+++++
Sbjct: 390 ILRAHCKPINLSVDVDLTHLAEITVGYVGADLASLCQQAAFAALKRSL 437
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQ 598
ILR + R P+A DVDLS IA+ T+
Sbjct: 738 ILRVHTRFSPLAPDVDLSVIAEGTE 762
>SB_19460| Best HMM Match : AAA (HMM E-Value=0)
Length = 340
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQ 598
ILR + R P+A DVDLS IA+ T+
Sbjct: 271 ILRVHTRFSPLAPDVDLSVIAEGTE 295
>SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)
Length = 1183
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +3
Query: 96 PAGARRHVGVVGRHAGQTDRTLVLVYRDGGDAPRSRARHSLAVQV 230
P +RH G RHAG D +Y D DA R R S +++V
Sbjct: 787 PYAEKRHEGNQDRHAGNVD-----IYNDSVDASRVRDYSSSSMRV 826
>SB_2354| Best HMM Match : GRP (HMM E-Value=3.9)
Length = 216
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -1
Query: 299 GSYRGHGYFSGRPAHFQEEGGDDDL 225
G Y G G F G A+ EEG DD L
Sbjct: 174 GEYNGEGGFEGDEAYGYEEGYDDGL 198
>SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -2
Query: 463 EEDPVPEISRAHFEEAMKFARRSVSDNDIRKY 368
EE +P +++ F+ A+K +SVSD DI+KY
Sbjct: 478 EELDLP-VNQEDFDMALKKVSKSVSDADIKKY 508
>SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 802
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIEAE 520
IL +L + P +DL + + T+G +C+ A A+++ I+AE
Sbjct: 714 ILEIHLARTPCEGSLDLEDLVERTEGYSGAEIAAVCREAALAALQENIQAE 764
>SB_12879| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 170 LSRWWRCPEVASETQFSCTGRRHPPPPGS 256
L W P++ + + FS T +R PPPP +
Sbjct: 503 LEGWLSSPDIEAGSCFSNTKQRPPPPPAT 531
>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 267
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 184 PPSR*TRTNVLSVCPACRPTTP 119
PPS + SVCP CRP +P
Sbjct: 214 PPSYSFKDEECSVCPCCRPGSP 235
>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 494
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 184 PPSR*TRTNVLSVCPACRPTTP 119
PPS + SVCP CRP +P
Sbjct: 214 PPSYSFKDEECSVCPCCRPGSP 235
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,776,652
Number of Sequences: 59808
Number of extensions: 483711
Number of successful extensions: 1362
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1361
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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