Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0465
(677 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC122550-1|AAI22551.1| 475|Homo sapiens VCP protein protein. 102 1e-21
BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing prot... 102 1e-21
BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing prot... 102 1e-21
BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein. 102 1e-21
AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing prot... 102 1e-21
AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmi... 102 1e-21
AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein. 102 1e-21
BX276089-2|CAI16431.1| 491|Homo sapiens katanin p60 (ATPase-con... 38 0.043
AL078581-2|CAI19505.1| 491|Homo sapiens katanin p60 (ATPase-con... 38 0.043
AF056022-1|AAC25114.1| 491|Homo sapiens p60 katanin protein. 38 0.043
AF313486-1|AAG29874.1| 305|Homo sapiens valosin-containing prot... 33 0.71
AK131091-1|BAC85141.1| 381|Homo sapiens FLJ00304 protein protein. 32 2.2
U78772-1|AAB70460.1| 750|Homo sapiens nuclear VCP-like protein ... 31 2.8
U68140-1|AAB70457.1| 856|Homo sapiens nuclear VCP-like protein ... 31 2.8
BX000476-1|CAI41974.1| 384|Homo sapiens protein phosphatase 2 (... 31 2.8
BC053343-1|AAH53343.1| 529|Homo sapiens karyopherin alpha 2 (RA... 31 2.8
BC012105-1|AAH12105.1| 659|Homo sapiens NVL protein protein. 31 2.8
BC000612-1|AAH00612.1| 490|Homo sapiens katanin p60 subunit A-l... 31 2.8
AL954664-1|CAI41961.1| 384|Homo sapiens protein phosphatase 2 (... 31 2.8
AL732314-1|CAI41583.1| 384|Homo sapiens protein phosphatase 2 (... 31 2.8
AL356750-1|CAI13718.1| 490|Homo sapiens katanin p60 subunit A-l... 31 2.8
U28386-1|AAA69957.1| 529|Homo sapiens hSRP1alpha protein. 31 5.0
U09559-1|AAA65700.1| 529|Homo sapiens Rch1 protein. 31 5.0
BT006665-1|AAP35311.1| 529|Homo sapiens karyopherin alpha 2 (RA... 31 5.0
BC005978-1|AAH05978.1| 529|Homo sapiens karyopherin alpha 2 (RA... 31 5.0
AJ303086-1|CAC83080.1| 529|Homo sapiens karyopherin alpha 2 pro... 31 5.0
BC067848-1|AAH67848.1| 529|Homo sapiens karyopherin alpha 2 (RA... 30 8.7
BC025390-1|AAH25390.1| 292|Homo sapiens TTC25 protein protein. 30 8.7
BC000981-1|AAH00981.1| 753|Homo sapiens spermatogenesis associa... 30 8.7
AK023232-1|BAB14482.1| 620|Homo sapiens protein ( Homo sapiens ... 30 8.7
>BC122550-1|AAI22551.1| 475|Homo sapiens VCP protein protein.
Length = 475
Score = 102 bits (244), Expect = 1e-21
Identities = 47/57 (82%), Positives = 54/57 (94%)
Frame = -2
Query: 475 MDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPT 305
M+++E+DPVPEI R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+
Sbjct: 389 MEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPS 444
Score = 78.2 bits (184), Expect = 3e-14
Identities = 37/63 (58%), Positives = 47/63 (74%)
Frame = -3
Query: 675 AILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIEAEIHREGVAS 496
AIL+ANLRK P+AKDVDL ++AK+T G +ICQRACKLAIR++IE+EI RE
Sbjct: 324 AILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQ 383
Query: 495 SKP 487
+ P
Sbjct: 384 TNP 386
Score = 33.5 bits (73), Expect = 0.71
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIE 526
IL+ + + + +A DVDL +A T G V +C A AIR+ ++
Sbjct: 49 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 97
>BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 102 bits (244), Expect = 1e-21
Identities = 47/57 (82%), Positives = 54/57 (94%)
Frame = -2
Query: 475 MDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPT 305
M+++E+DPVPEI R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+
Sbjct: 720 MEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPS 775
Score = 78.2 bits (184), Expect = 3e-14
Identities = 37/63 (58%), Positives = 47/63 (74%)
Frame = -3
Query: 675 AILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIEAEIHREGVAS 496
AIL+ANLRK P+AKDVDL ++AK+T G +ICQRACKLAIR++IE+EI RE
Sbjct: 655 AILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQ 714
Query: 495 SKP 487
+ P
Sbjct: 715 TNP 717
Score = 33.5 bits (73), Expect = 0.71
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIE 526
IL+ + + + +A DVDL +A T G V +C A AIR+ ++
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 102 bits (244), Expect = 1e-21
Identities = 47/57 (82%), Positives = 54/57 (94%)
Frame = -2
Query: 475 MDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPT 305
M+++E+DPVPEI R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+
Sbjct: 720 MEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPS 775
Score = 78.2 bits (184), Expect = 3e-14
Identities = 37/63 (58%), Positives = 47/63 (74%)
Frame = -3
Query: 675 AILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIEAEIHREGVAS 496
AIL+ANLRK P+AKDVDL ++AK+T G +ICQRACKLAIR++IE+EI RE
Sbjct: 655 AILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQ 714
Query: 495 SKP 487
+ P
Sbjct: 715 TNP 717
Score = 33.5 bits (73), Expect = 0.71
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIE 526
IL+ + + + +A DVDL +A T G V +C A AIR+ ++
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein.
Length = 644
Score = 102 bits (244), Expect = 1e-21
Identities = 47/57 (82%), Positives = 54/57 (94%)
Frame = -2
Query: 475 MDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPT 305
M+++E+DPVPEI R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+
Sbjct: 558 MEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPS 613
Score = 78.2 bits (184), Expect = 3e-14
Identities = 37/63 (58%), Positives = 47/63 (74%)
Frame = -3
Query: 675 AILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIEAEIHREGVAS 496
AIL+ANLRK P+AKDVDL ++AK+T G +ICQRACKLAIR++IE+EI RE
Sbjct: 493 AILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQ 552
Query: 495 SKP 487
+ P
Sbjct: 553 TNP 555
Score = 33.5 bits (73), Expect = 0.71
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIE 526
IL+ + + + +A DVDL +A T G V +C A AIR+ ++
Sbjct: 218 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 266
>AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 102 bits (244), Expect = 1e-21
Identities = 47/57 (82%), Positives = 54/57 (94%)
Frame = -2
Query: 475 MDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPT 305
M+++E+DPVPEI R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+
Sbjct: 720 MEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPS 775
Score = 78.2 bits (184), Expect = 3e-14
Identities = 37/63 (58%), Positives = 47/63 (74%)
Frame = -3
Query: 675 AILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIEAEIHREGVAS 496
AIL+ANLRK P+AKDVDL ++AK+T G +ICQRACKLAIR++IE+EI RE
Sbjct: 655 AILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQ 714
Query: 495 SKP 487
+ P
Sbjct: 715 TNP 717
Score = 33.5 bits (73), Expect = 0.71
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIE 526
IL+ + + + +A DVDL +A T G V +C A AIR+ ++
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmic
reticulum ATPase protein.
Length = 806
Score = 102 bits (244), Expect = 1e-21
Identities = 47/57 (82%), Positives = 54/57 (94%)
Frame = -2
Query: 475 MDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPT 305
M+++E+DPVPEI R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+
Sbjct: 720 MEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPS 775
Score = 78.2 bits (184), Expect = 3e-14
Identities = 37/63 (58%), Positives = 47/63 (74%)
Frame = -3
Query: 675 AILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIEAEIHREGVAS 496
AIL+ANLRK P+AKDVDL ++AK+T G +ICQRACKLAIR++IE+EI RE
Sbjct: 655 AILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQ 714
Query: 495 SKP 487
+ P
Sbjct: 715 TNP 717
Score = 33.5 bits (73), Expect = 0.71
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIE 526
IL+ + + + +A DVDL +A T G V +C A AIR+ ++
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein.
Length = 806
Score = 102 bits (244), Expect = 1e-21
Identities = 47/57 (82%), Positives = 54/57 (94%)
Frame = -2
Query: 475 MDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPT 305
M+++E+DPVPEI R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+
Sbjct: 720 MEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPS 775
Score = 78.2 bits (184), Expect = 3e-14
Identities = 37/63 (58%), Positives = 47/63 (74%)
Frame = -3
Query: 675 AILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIEAEIHREGVAS 496
AIL+ANLRK P+AKDVDL ++AK+T G +ICQRACKLAIR++IE+EI RE
Sbjct: 655 AILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQ 714
Query: 495 SKP 487
+ P
Sbjct: 715 TNP 717
Score = 33.5 bits (73), Expect = 0.71
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIE 526
IL+ + + + +A DVDL +A T G V +C A AIR+ ++
Sbjct: 380 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
>BX276089-2|CAI16431.1| 491|Homo sapiens katanin p60
(ATPase-containing) subunit A 1 protein.
Length = 491
Score = 37.5 bits (83), Expect = 0.043
Identities = 19/49 (38%), Positives = 31/49 (63%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIE 526
+LR +LR+L +A DVDL+ IA+ +G +C+ A +A+R+ IE
Sbjct: 390 LLRISLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMRRRIE 438
>AL078581-2|CAI19505.1| 491|Homo sapiens katanin p60
(ATPase-containing) subunit A 1 protein.
Length = 491
Score = 37.5 bits (83), Expect = 0.043
Identities = 19/49 (38%), Positives = 31/49 (63%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIE 526
+LR +LR+L +A DVDL+ IA+ +G +C+ A +A+R+ IE
Sbjct: 390 LLRISLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMRRRIE 438
>AF056022-1|AAC25114.1| 491|Homo sapiens p60 katanin protein.
Length = 491
Score = 37.5 bits (83), Expect = 0.043
Identities = 19/49 (38%), Positives = 31/49 (63%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIE 526
+LR +LR+L +A DVDL+ IA+ +G +C+ A +A+R+ IE
Sbjct: 390 LLRISLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMRRRIE 438
>AF313486-1|AAG29874.1| 305|Homo sapiens valosin-containing protein
protein.
Length = 305
Score = 33.5 bits (73), Expect = 0.71
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIE 526
IL+ + + + +A DVDL +A T G V +C A AIR+ ++
Sbjct: 8 ILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 56
>AK131091-1|BAC85141.1| 381|Homo sapiens FLJ00304 protein protein.
Length = 381
Score = 31.9 bits (69), Expect = 2.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 531 WPGEWPACRLAGISSVRS 584
WPGEW CR GI ++RS
Sbjct: 2 WPGEWVRCRETGIKALRS 19
>U78772-1|AAB70460.1| 750|Homo sapiens nuclear VCP-like protein
NVLp.1 protein.
Length = 750
Score = 31.5 bits (68), Expect = 2.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 445 EISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQ 341
++S HFEEA K R S+S D YE ++L +
Sbjct: 716 KVSHKHFEEAFKKVRSSISKKDQIMYERLQESLSR 750
>U68140-1|AAB70457.1| 856|Homo sapiens nuclear VCP-like protein
NVLp.2 protein.
Length = 856
Score = 31.5 bits (68), Expect = 2.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 445 EISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQ 341
++S HFEEA K R S+S D YE ++L +
Sbjct: 822 KVSHKHFEEAFKKVRSSISKKDQIMYERLQESLSR 856
>BX000476-1|CAI41974.1| 384|Homo sapiens protein phosphatase 2
(formerly 2A), regulatory subunit B'', beta protein.
Length = 384
Score = 31.5 bits (68), Expect = 2.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +2
Query: 143 TNRQDVSSGLSRWWRCPEVASETQFSCTGRRHPPP----PGSGLVAR*STRAPCSS 298
T R DV++G W R E S GR PPP P S +R + PC++
Sbjct: 63 TRRSDVNAGALVWERGRRARFEAALSSAGRTAPPPRSPRPASPRSSRGAGPVPCAA 118
>BC053343-1|AAH53343.1| 529|Homo sapiens karyopherin alpha 2 (RAG
cohort 1, importin alpha 1) protein.
Length = 529
Score = 31.5 bits (68), Expect = 2.8
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +2
Query: 494 LLATPSRWISASMAWRMASLQARWHIFRQV----SATEPCVTLAM*DKSTSLAIGNLRRL 661
LLA+P IS W + ++ +FR + A +P + L + +SLA G LR L
Sbjct: 170 LLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPEMSSLACGYLRNL 229
>BC012105-1|AAH12105.1| 659|Homo sapiens NVL protein protein.
Length = 659
Score = 31.5 bits (68), Expect = 2.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 445 EISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQ 341
++S HFEEA K R S+S D YE ++L +
Sbjct: 625 KVSHKHFEEAFKKVRSSISKKDQIMYERLQESLSR 659
>BC000612-1|AAH00612.1| 490|Homo sapiens katanin p60 subunit A-like
1 protein.
Length = 490
Score = 31.5 bits (68), Expect = 2.8
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIEAEIHREGVASS 493
+L+ NLR++ + D+ L IA+ +G +C+ A +A+R+ I E A S
Sbjct: 389 LLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRINGLSPEEIRALS 448
Query: 492 KPPLPL 475
K L +
Sbjct: 449 KEELQM 454
>AL954664-1|CAI41961.1| 384|Homo sapiens protein phosphatase 2
(formerly 2A), regulatory subunit B'', beta protein.
Length = 384
Score = 31.5 bits (68), Expect = 2.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +2
Query: 143 TNRQDVSSGLSRWWRCPEVASETQFSCTGRRHPPP----PGSGLVAR*STRAPCSS 298
T R DV++G W R E S GR PPP P S +R + PC++
Sbjct: 63 TRRSDVNAGALVWERGRRARFEAALSSAGRTAPPPRSPRPASPRSSRGAGPVPCAA 118
>AL732314-1|CAI41583.1| 384|Homo sapiens protein phosphatase 2
(formerly 2A), regulatory subunit B'', beta protein.
Length = 384
Score = 31.5 bits (68), Expect = 2.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +2
Query: 143 TNRQDVSSGLSRWWRCPEVASETQFSCTGRRHPPP----PGSGLVAR*STRAPCSS 298
T R DV++G W R E S GR PPP P S +R + PC++
Sbjct: 63 TRRSDVNAGALVWERGRRARFEAALSSAGRTAPPPRSPRPASPRSSRGAGPVPCAA 118
>AL356750-1|CAI13718.1| 490|Homo sapiens katanin p60 subunit A-like
1 protein.
Length = 490
Score = 31.5 bits (68), Expect = 2.8
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIEAEIHREGVASS 493
+L+ NLR++ + D+ L IA+ +G +C+ A +A+R+ I E A S
Sbjct: 389 LLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRINGLSPEEIRALS 448
Query: 492 KPPLPL 475
K L +
Sbjct: 449 KEELQM 454
>U28386-1|AAA69957.1| 529|Homo sapiens hSRP1alpha protein.
Length = 529
Score = 30.7 bits (66), Expect = 5.0
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +2
Query: 494 LLATPSRWISASMAWRMASLQARWHIFRQV----SATEPCVTLAM*DKSTSLAIGNLRRL 661
LLA+P IS W + ++ +FR + A +P + L +SLA G LR L
Sbjct: 170 LLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNL 229
>U09559-1|AAA65700.1| 529|Homo sapiens Rch1 protein.
Length = 529
Score = 30.7 bits (66), Expect = 5.0
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +2
Query: 494 LLATPSRWISASMAWRMASLQARWHIFRQV----SATEPCVTLAM*DKSTSLAIGNLRRL 661
LLA+P IS W + ++ +FR + A +P + L +SLA G LR L
Sbjct: 170 LLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNL 229
>BT006665-1|AAP35311.1| 529|Homo sapiens karyopherin alpha 2 (RAG
cohort 1, importin alpha 1) protein.
Length = 529
Score = 30.7 bits (66), Expect = 5.0
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +2
Query: 494 LLATPSRWISASMAWRMASLQARWHIFRQV----SATEPCVTLAM*DKSTSLAIGNLRRL 661
LLA+P IS W + ++ +FR + A +P + L +SLA G LR L
Sbjct: 170 LLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNL 229
>BC005978-1|AAH05978.1| 529|Homo sapiens karyopherin alpha 2 (RAG
cohort 1, importin alpha 1) protein.
Length = 529
Score = 30.7 bits (66), Expect = 5.0
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +2
Query: 494 LLATPSRWISASMAWRMASLQARWHIFRQV----SATEPCVTLAM*DKSTSLAIGNLRRL 661
LLA+P IS W + ++ +FR + A +P + L +SLA G LR L
Sbjct: 170 LLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNL 229
>AJ303086-1|CAC83080.1| 529|Homo sapiens karyopherin alpha 2
protein.
Length = 529
Score = 30.7 bits (66), Expect = 5.0
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +2
Query: 494 LLATPSRWISASMAWRMASLQARWHIFRQV----SATEPCVTLAM*DKSTSLAIGNLRRL 661
LLA+P IS W + ++ +FR + A +P + L +SLA G LR L
Sbjct: 170 LLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNL 229
>BC067848-1|AAH67848.1| 529|Homo sapiens karyopherin alpha 2 (RAG
cohort 1, importin alpha 1) protein.
Length = 529
Score = 29.9 bits (64), Expect = 8.7
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +2
Query: 494 LLATPSRWISASMAWRMASLQARWHIFRQV----SATEPCVTLAM*DKSTSLAIGNLRRL 661
LLA+P IS W + ++ +FR + A +P + L +SLA G LR L
Sbjct: 170 LLASPHAHISEQDVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNL 229
>BC025390-1|AAH25390.1| 292|Homo sapiens TTC25 protein protein.
Length = 292
Score = 29.9 bits (64), Expect = 8.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 599 KVQWR*PDGRYASEPASWPFARPSRRRSIAKESPAASRR 483
K WR P S A+W + RP R R +A+ + RR
Sbjct: 247 KPPWRRPGCSTRSAAATWSWTRPGRPRIMARSPSSVPRR 285
>BC000981-1|AAH00981.1| 753|Homo sapiens spermatogenesis associated
5-like 1 protein.
Length = 753
Score = 29.9 bits (64), Expect = 8.7
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAI 541
IL+ K+PI+ VDL +A++T G V +C+ A A+
Sbjct: 377 ILQVITSKMPISSHVDLGLLAEMTVGYVGADLTALCREAAMHAL 420
>AK023232-1|BAB14482.1| 620|Homo sapiens protein ( Homo sapiens
cDNA FLJ13170 fis, clone NT2RP3003809, weakly similar to
SAV PROTEIN. ).
Length = 620
Score = 29.9 bits (64), Expect = 8.7
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAI 541
IL+ K+PI+ VDL +A++T G V +C+ A A+
Sbjct: 377 ILQVITSKMPISSHVDLGLLAEMTVGYVGADLTALCREAAMHAL 420
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,643,272
Number of Sequences: 237096
Number of extensions: 2337938
Number of successful extensions: 6611
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6600
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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