Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0465
(677 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 87 1e-17
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 85 3e-17
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 83 2e-16
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 40 0.002
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 33 0.17
At4g27340.1 68417.m03923 Met-10+ like family protein ; contains... 31 0.93
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 30 1.2
At3g63100.1 68416.m07087 glycine-rich protein 30 1.6
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 29 2.8
At5g16440.1 68418.m01921 isopentenyl-diphosphate delta-isomerase... 29 2.8
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 29 3.7
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 29 3.7
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 29 3.7
At3g02780.1 68416.m00270 isopentenyl-diphosphate delta-isomerase... 28 4.9
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 28 4.9
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 28 4.9
At4g16765.1 68417.m02532 oxidoreductase, 2OG-Fe(II) oxygenase fa... 28 6.5
At1g78310.1 68414.m09126 VQ motif-containing protein contains PF... 27 8.6
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 86.6 bits (205), Expect = 1e-17
Identities = 48/96 (50%), Positives = 59/96 (61%)
Frame = -2
Query: 595 FSGADLTEDMPASLQAGHSPGHRGGDPXXXXXXXXXXXAVMDMDEEDPVPEISRAHFEEA 416
FSGAD+TE S + ++ M+ DEE+ + EI HFEE+
Sbjct: 686 FSGADITEICQRSCK--YAIRENIEKDIEKERKRAESPEAMEEDEEE-IAEIKAGHFEES 742
Query: 415 MKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFP 308
MK+ARRSVSD DIRKY+ FAQTLQQSRGFG+ FRFP
Sbjct: 743 MKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 778
Score = 61.3 bits (142), Expect = 6e-10
Identities = 30/62 (48%), Positives = 40/62 (64%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIEAEIHREGVASS 493
I ++ LRK P+AKDVDL +AK TQG +ICQR+CK AIR+ IE +I +E +
Sbjct: 660 IFKSCLRKSPVAKDVDLRALAKYTQGFSGADITEICQRSCKYAIRENIEKDIEKERKRAE 719
Query: 492 KP 487
P
Sbjct: 720 SP 721
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIE 526
+LR + + + +A+DVDL ++K T G V +C A IR+ ++
Sbjct: 384 VLRIHTKNMKLAEDVDLERVSKDTHGYVGADLAALCTEAALQCIREKMD 432
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 85.4 bits (202), Expect = 3e-17
Identities = 40/55 (72%), Positives = 45/55 (81%)
Frame = -2
Query: 475 MDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRF 311
M+ D D V EI AHFEE+MK+ARRSVSD DIRKY+ FAQTLQQSRGFG+ FRF
Sbjct: 724 MEEDGVDEVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 778
Score = 64.9 bits (151), Expect = 5e-11
Identities = 33/62 (53%), Positives = 40/62 (64%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIEAEIHREGVASS 493
I +A LRK PIAKDVD+ +AK TQG +ICQRACK AIR+ IE +I +E S
Sbjct: 660 IFKAALRKSPIAKDVDIGALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKEKRRSE 719
Query: 492 KP 487
P
Sbjct: 720 NP 721
Score = 33.9 bits (74), Expect = 0.099
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIE 526
+LR + + + +A+DVDL I+K T G V +C A IR+ ++
Sbjct: 383 VLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCTEAALQCIREKMD 431
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 83.0 bits (196), Expect = 2e-16
Identities = 38/50 (76%), Positives = 43/50 (86%)
Frame = -2
Query: 460 EDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRF 311
+D V EI AHFEE+MK+ARRSVSD DIRKY+ FAQTLQQSRGFG+ FRF
Sbjct: 729 DDEVSEIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 778
Score = 63.3 bits (147), Expect = 1e-10
Identities = 32/62 (51%), Positives = 40/62 (64%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIEAEIHREGVASS 493
I +A LRK P+AKDVD++ +AK TQG +ICQRACK AIR+ IE +I E S
Sbjct: 659 IFKACLRKSPVAKDVDVTALAKYTQGFSGADITEICQRACKYAIRENIEKDIENERRRSQ 718
Query: 492 KP 487
P
Sbjct: 719 NP 720
Score = 33.9 bits (74), Expect = 0.099
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIE 526
+LR + + + +A+DVDL I+K T G V +C A IR+ ++
Sbjct: 383 VLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCTEAALQCIREKMD 431
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = -3
Query: 675 AILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIEAE 520
AIL+ +LRK+P + D+ L +A +T+G IC+ A A+ +++E E
Sbjct: 901 AILKIHLRKIPCSSDICLKELASITKGYTGADISLICREAAIAALEESLEME 952
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIEAE 520
IL+ L+ + D+D +IA++ +G ++C++A IR+ ++AE
Sbjct: 261 ILKVTLKGERVEPDIDFDHIARLCEGYTGSDIFELCKKAAYFPIREILDAE 311
>At4g27340.1 68417.m03923 Met-10+ like family protein ; contains
Pfam profile PF02475: Met-10+ like-protein
Length = 619
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 296 SRVCWESEVGSEAAALLQGLREHLVLADVVVGHG 397
+RV W S++G+E LL G ++ V+ DV G G
Sbjct: 422 ARVYWNSKLGTERQRLLLGFDQNDVVCDVFAGVG 455
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = -3
Query: 675 AILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIEAEIHRE 508
A++ NLR + +A DV++ +A+ T+G +C+ A +R+ I + E
Sbjct: 420 ALININLRTVEVASDVNIEDVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDE 475
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 308 NKRGSYRGHGYFSGRPAHFQEEG 240
++RG RGHG+ GR H QE G
Sbjct: 133 HRRGRGRGHGHGRGRGGHVQEAG 155
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/62 (24%), Positives = 32/62 (51%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIEAEIHREGVASS 493
IL+ L+ + D++ IA++ + ++C++A IR+ +EAE + V+
Sbjct: 264 ILKVVLKGESVESDINYDRIARLCEDYTGSDIFELCKKAAYFPIREILEAEKEGKRVSVP 323
Query: 492 KP 487
+P
Sbjct: 324 RP 325
>At5g16440.1 68418.m01921 isopentenyl-diphosphate delta-isomerase I
/ isopentenyl diphosphate:dimethylallyl diphosphate
isomerase I (IPP1) identical to SP|Q38929
Length = 233
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 377 DVVVGHGAARELHRLLEVSAANLRNGVFLVHVHNGSGGLLLATPSRW-ISASMAW 538
D VVGH H + ++ A NL + F V + N LLL S+ ++ + W
Sbjct: 29 DRVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSKTKVTFPLVW 83
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQ 535
IL+ + RK+ + + +DL IA+ G+ + +C A A+R+
Sbjct: 341 ILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 386
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQ 535
IL+ + RK+ + + +DL IA+ G+ + +C A A+R+
Sbjct: 341 ILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 386
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSV 589
IL+ + RK P+A+D+D +A +T G V
Sbjct: 588 ILQVHARKKPMAEDLDYMAVASMTDGMV 615
>At3g02780.1 68416.m00270 isopentenyl-diphosphate delta-isomerase II
/ isopentenyl diphosphate:dimethylallyl diphosphate
isomerase II (IPP2) identical to isopentenyl
diphosphate:dimethylallyl diphosphate isomerase (IPP2)
GB:U49259 [Arabidopsis thaliana]
Length = 284
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 377 DVVVGHGAARELHRLLEVSAANLRNGVFLVHVHNGSGGLLLATPSRW-ISASMAW 538
D VVGH + H + + A NL + F V + N LLL S ++ + W
Sbjct: 80 DRVVGHDSKYNCHLMENIEAKNLLHRAFSVFLFNSKYELLLQQRSNTKVTFPLVW 134
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIEAE 520
ILR L K + +++D +A +T+G + +C A +R+ I+ E
Sbjct: 698 ILRTLLAKEKVDENLDYKELAMMTEGYTGSDLKNLCTTAAYRPVRELIQQE 748
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -3
Query: 672 ILRANLRKLPIAKDVDLSYIAKVTQGSVALT*RKICQRACKLAIRQAIEAE 520
ILR L K + +++D +A +T+G + +C A +R+ I+ E
Sbjct: 693 ILRTLLAKEKVDENLDYKELAMMTEGYTGSDLKNLCTTAAYRPVRELIQQE 743
>At4g16765.1 68417.m02532 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to SP|P40902 isp7 from
Schizosaccharomyces pombe, GI:475959
flavanone-3-hydroxylase (naringenin 3-dioxygenase) from
Medicago sativa, GI:1944197 flavanone 3-hydroxylase from
Perilla frutescens; contains Pfam profile PF03171:
oxidoreductase, 2OG-Fe(II) oxygenase family
Length = 247
Score = 27.9 bits (59), Expect = 6.5
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +1
Query: 100 PG-PGAMLVWWGDTQDKQTGR*FWSIEMVEMPRGRERDTV*LYRSSSPPSSWKWAGRPLK 276
PG GA +V GD ++ T F S MP G+ER +V + +P + K
Sbjct: 161 PGIKGAFIVNIGDMMERWTNGLFRSTLHRVMPVGKERYSVVFFLDPNPDCNVKCLESCCS 220
Query: 277 YPCPL*LPRLL 309
CP P +L
Sbjct: 221 ETCPPRFPPIL 231
>At1g78310.1 68414.m09126 VQ motif-containing protein contains
PF05678: VQ motif
Length = 311
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 176 RWWRCPEVASETQFSCTGRRHPPPPGSGLVAR*STRAP 289
RW++ E A +Q + HPPPP S + T P
Sbjct: 224 RWYQQQENAPPSQHNSFPPPHPPPPSSAVSQTVPTSIP 261
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,744,846
Number of Sequences: 28952
Number of extensions: 316387
Number of successful extensions: 852
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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