Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0464
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...   113   3e-26
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    38   0.002
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    30   0.28 
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    28   1.1  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    28   1.5  
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa...    27   2.6  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   3.4  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    27   3.4  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    27   3.4  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    27   3.4  
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar...    27   3.4  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    25   7.9  
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    25   7.9  

>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score =  113 bits (271), Expect = 3e-26
 Identities = 55/83 (66%), Positives = 62/83 (74%)
 Frame = -1

Query: 505  KNGVEIDMRGRCSAGQKVLACLIIRLALAETFSSRFGILALDEPTTNLDQENIHSLCAAL 326
            K   E+DMRGRCSAGQKVLAC+IIRLALAE      GILALDEPTTNLD+ENI SL   L
Sbjct: 1171 KGDAELDMRGRCSAGQKVLACIIIRLALAECLGVNCGILALDEPTTNLDEENICSLAKNL 1230

Query: 325  GEIVQERMMQKNFMFIIITHDKE 257
              IV+ R  Q NF  I+ITHD++
Sbjct: 1231 SRIVEFRRKQANFQLIVITHDEQ 1253



 Score = 35.5 bits (78), Expect = 0.007
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -2

Query: 636  NMIIRELWRKIYRGNDIDYIEIKTEGNLTVESERRKYDYRVVHLK 502
            N I+ ELW++ Y G DID I I+++         R Y+YRV  +K
Sbjct: 1130 NRIVDELWKQTYCGTDIDTILIRSDSE---GKGNRTYNYRVCMVK 1171


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 25/67 (37%), Positives = 33/67 (49%)
 Frame = -1

Query: 436 IRLALAETFSSRFGILALDEPTTNLDQENIHSLCAALGEIVQERMMQKNFMFIIITHDKE 257
           ++L LA     +  IL LDEPT +LD  NI  L A L         QKN   +I++HD  
Sbjct: 569 MKLELARAMLQKADILLLDEPTNHLDVANIAWLEAYL-------TSQKNITCLIVSHDSS 621

Query: 256 L*SHLGT 236
              H+ T
Sbjct: 622 FLDHVCT 628



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 436  IRLALAETFSSRFGILALDEPTTNLDQENIHSLCAAL 326
            +++ +A    +   +L LDEPT  LD++ +  L  A+
Sbjct: 917  VKVVIAACLWNNPQLLVLDEPTNFLDRDALGGLAVAI 953


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 22/65 (33%), Positives = 31/65 (47%)
 Frame = -1

Query: 436 IRLALAETFSSRFGILALDEPTTNLDQENIHSLCAALGEIVQERMMQKNFMFIIITHDKE 257
           ++LAL         IL LDEPT +LD  N+  L   L       + QK+   II++HD  
Sbjct: 555 MKLALTRAMFKNPDILLLDEPTNHLDVVNVAWLENFL-------VNQKDVSSIIVSHDSG 607

Query: 256 L*SHL 242
              H+
Sbjct: 608 FLDHV 612



 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 436  IRLALAETFSSRFGILALDEPTTNLDQENIHSLCAAL 326
            ++L LA     R  ++ LDEPT  LD++++ +L   L
Sbjct: 910  VKLVLAACTWLRPHVIVLDEPTNYLDRDSLGALSKGL 946


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = -1

Query: 433 RLALAETFSSRFGILALDEPTTNLDQENIHSLCAALGEIVQERMMQKNFMFIIITHDKEL 254
           R+ALA        IL LDEPT+ LD    + +  A+      R  +K    ++ITHD   
Sbjct: 578 RIALARALLRDTEILILDEPTSALDPITKNLVMDAI------RAHRKGKTTLVITHDMSQ 631

Query: 253 *SH---LGTLIKLHTIMRC 206
            ++   +  + K H I RC
Sbjct: 632 INNDELVLVIDKGHLIQRC 650


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 394 ILALDEPTTNLDQENIHSLCAAL 326
           IL LDEPT +LD E++ +L  A+
Sbjct: 657 ILILDEPTNHLDMESMDALTRAV 679


>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 436 IRLALAETFSSRFGILALDEPTTNLDQENI 347
           +R+AL+     +  +L LDEPT +LD E +
Sbjct: 227 MRVALSRALFIKPSLLLLDEPTNHLDLEAV 256



 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 394 ILALDEPTTNLDQENIHSLCAAL 326
           IL LDEPT +LD  +I +L  A+
Sbjct: 533 ILLLDEPTNHLDITSIDALAKAI 555


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 571 DFNVINIITSVYLSPKFPDNHVGYF 645
           DF+  NI+   Y+S ++  +H+G+F
Sbjct: 373 DFHNENILLGAYISTRWRQSHMGFF 397


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -1

Query: 430 LALAETFSSRFGILALDEPT-TNLDQENIHSLCAALGEIVQERMMQKNFMFIIITHDKE 257
           L +A T+     +L L  P+  +L   NI +LC +L   +++ +     + +I+T+D++
Sbjct: 402 LNVAATYRLDESLLRLQMPSIVDLGTVNIQALCMSLQSTLEKEITYAMNVLLILTNDQK 460


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 436 IRLALAETFSSRFGILALDEPTTNLDQENI 347
           +R+ALA     +  ++ LDEPT +LD E +
Sbjct: 427 MRIALARILFIKPTLMMLDEPTNHLDLEAV 456



 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 394 ILALDEPTTNLDQENIHSLCAAL 326
           IL LDEPT  LD + I +L  AL
Sbjct: 733 ILLLDEPTNALDIDTIDALADAL 755


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = -1

Query: 352 NIHSLCAALGEIVQERMM--QKNFMFII--ITHDKE 257
           NI+ +C A G  V+E ++  Q NF+  +  ITH K+
Sbjct: 74  NIYEICEAFGYRVEEHLVRTQDNFILCLHRITHPKQ 109


>SPCC126.01c ||SPCC576.18c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 369

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 467 CWSKSTRLPNNKASTCRDIQFQVWNTCFG 381
           C    T    N A+ CRD + +VW+T  G
Sbjct: 268 CTDVLTLADGNIATACRDEEIRVWDTTTG 296


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 433 RLALAETFSSRFGILALDEPTTNLDQENIHSLCAALGEI 317
           R  LA     R  +L LDEP   LD  +   L + LGE+
Sbjct: 156 RAMLASKLVQRPQLLLLDEPYAGLDVTSRSVLSSLLGEM 194


>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = +2

Query: 338 QTVNVFLIQICCWF--IQSKYSK-PGTECL 418
           Q++N+FL + C WF  +  ++S+ PG E L
Sbjct: 38  QSLNIFLGEACLWFYVLYKRHSQGPGYESL 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,949,883
Number of Sequences: 5004
Number of extensions: 61600
Number of successful extensions: 190
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)