Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0464
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0313 - 17590109-17590148,17590254-17590382,17590479-175906... 113 2e-25
04_04_1439 + 33614112-33614123,33614278-33615649,33615705-33616141 40 0.002
08_02_1614 - 28243532-28244589,28245149-28245383,28245524-282457... 31 0.66
09_06_0365 - 22582467-22583524,22584407-22584641,22585474-225856... 31 0.87
03_04_0206 - 18493178-18495310 31 1.1
06_03_0179 - 17604561-17606435 29 2.6
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72... 29 3.5
11_01_0585 - 4642555-4643130,4643805-4644116,4644178-4644876 28 6.1
03_03_0277 + 16116017-16117424,16117461-16117660,16117739-161178... 28 6.1
05_03_0017 - 7392742-7393110,7393212-7393319,7393522-7394079,739... 28 8.1
>02_03_0313 - 17590109-17590148,17590254-17590382,17590479-17590612,
17590779-17590841,17590920-17591070,17593372-17593424,
17593483-17593629,17593839-17594163,17594240-17594409,
17595252-17595453,17596065-17596273,17597051-17597260,
17597360-17597489,17599664-17600402,17600411-17600531
Length = 940
Score = 113 bits (271), Expect = 2e-25
Identities = 74/158 (46%), Positives = 92/158 (58%), Gaps = 8/158 (5%)
Frame = -1
Query: 688 ALNKCLMEFHREKMENI--------QHDYQGTLAKDIQR**Y*LH*NQD*RQLNCRIRTT 533
AL+K LM FH KME I Q Y+G +DI + N D R +
Sbjct: 766 ALDKALMRFHTMKMEEINKIIKELWQQTYRG---QDIDY----ISINSDSEGAGTRSYSY 818
Query: 532 QI*LQSSTSKNGVEIDMRGRCSAGQKVLACLIIRLALAETFSSRFGILALDEPTTNLDQE 353
++ +Q+ + E++MRGRCSAGQKVLA LIIRLALAETF GILALDEPTTNLD
Sbjct: 819 RVVMQTGDA----ELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGP 874
Query: 352 NIHSLCAALGEIVQERMMQKNFMFIIITHDKEL*SHLG 239
N SL AL I++ R Q+NF I+ITHD+ +G
Sbjct: 875 NAESLAGALLRIMESRKGQENFQLIVITHDERFAQLIG 912
>04_04_1439 + 33614112-33614123,33614278-33615649,33615705-33616141
Length = 606
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/53 (45%), Positives = 29/53 (54%)
Frame = -1
Query: 478 GRCSAGQKVLACLIIRLALAETFSSRFGILALDEPTTNLDQENIHSLCAALGE 320
G+ S GQK R+ALA +L LDEPT NLD +NI +L AL E
Sbjct: 500 GKLSGGQKA------RVALASVALGEPHVLLLDEPTNNLDMQNIDALADALDE 546
>08_02_1614 -
28243532-28244589,28245149-28245383,28245524-28245734,
28245834-28245907,28246465-28246665
Length = 592
Score = 31.5 bits (68), Expect = 0.66
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -1
Query: 394 ILALDEPTTNLDQENIHSLCAALGE 320
+L LDEPT +LD E I SL AL E
Sbjct: 516 LLLLDEPTNHLDIETIDSLAEALNE 540
Score = 29.1 bits (62), Expect = 3.5
Identities = 24/84 (28%), Positives = 43/84 (51%)
Frame = -1
Query: 436 IRLALAETFSSRFGILALDEPTTNLDQENIHSLCAALGEIVQERMMQKNFMFIIITHDKE 257
+R+ALA IL LDEPT +LD E C L +E + + + + ++I+H ++
Sbjct: 216 MRIALARALFMNPTILLLDEPTNHLDLE----ACVWL----EETLKKFDRILVVISHSQD 267
Query: 256 L*SHLGTLIKLHTIMRCLEMTMAN 185
+ + T I +H + L++ N
Sbjct: 268 FLNGVCTNI-IHMQSKKLKLYSGN 290
>09_06_0365 -
22582467-22583524,22584407-22584641,22585474-22585684,
22585775-22585848,22585943-22586092
Length = 575
Score = 31.1 bits (67), Expect = 0.87
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -1
Query: 394 ILALDEPTTNLDQENIHSLCAALGE 320
+L LDEPT +LD E I SL AL E
Sbjct: 499 MLLLDEPTNHLDIETIDSLAEALNE 523
Score = 29.9 bits (64), Expect = 2.0
Identities = 25/84 (29%), Positives = 43/84 (51%)
Frame = -1
Query: 436 IRLALAETFSSRFGILALDEPTTNLDQENIHSLCAALGEIVQERMMQKNFMFIIITHDKE 257
+R+ALA IL LDEPT +LD E C L +E + + + + ++I+H ++
Sbjct: 199 MRIALARALFMNPTILLLDEPTNHLDLE----ACVWL----EETLKKFDRILVVISHSQD 250
Query: 256 L*SHLGTLIKLHTIMRCLEMTMAN 185
+ + T I +H R L++ N
Sbjct: 251 FLNGVCTNI-IHMQNRKLKLYTGN 273
>03_04_0206 - 18493178-18495310
Length = 710
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -1
Query: 394 ILALDEPTTNLDQENIHSLCAALGE 320
IL LDEPT +LD ++I +L AL E
Sbjct: 627 ILLLDEPTNHLDMQSIDALADALDE 651
>06_03_0179 - 17604561-17606435
Length = 624
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 397 GILALDEPTTNLDQENIHSLCAALGEIVQER 305
G+L LDEPT+ LD + H + L + R
Sbjct: 214 GVLLLDEPTSGLDSSSAHVVVGCLRAVAAAR 244
>06_01_0090 -
724296-724532,724756-724938,725038-725088,725520-725639,
725738-725840,726106-726264,726728-726846,726891-727004,
727119-727277,727404-727451,728464-728640,729064-729116,
729549-729661,729793-729873,729966-730081,730786-730905,
732321-732429,732593-732770,732852-732920,733102-733233,
733657-733766,733843-734003,734081-734171,734258-734355,
734499-734619,734732-734892,734985-735090,735142-735236,
735828-735852,736008-736084,736196-736282,736372-736421,
736558-736639,736735-736795,737064-737116,737206-737395,
737472-737595,737860-737962,738064-738156,740344-740422,
740508-740584,740915-741043,742614-742731,742816-742913,
743457-743546,744998-745123,745238-745351,745488-745611,
745865-746019,746104-746201,746357-746600
Length = 1926
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -3
Query: 497 CGNRHA--WKM*CWSKSTRLPNNKASTCRDIQFQVWN 393
CGN W + + L N+ AS C+D Q+++W+
Sbjct: 850 CGNLRLVQWPLFLLTSKIMLANDYASDCKDSQYELWD 886
>11_01_0585 - 4642555-4643130,4643805-4644116,4644178-4644876
Length = 528
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 517 SSTSKNGVEIDMRGRCSAGQKVLACLII 434
S++S GV+ R RC A + AC+++
Sbjct: 61 SASSSRGVKAGRRARCEAASSLAACVLV 88
>03_03_0277 +
16116017-16117424,16117461-16117660,16117739-16117816,
16118381-16118533,16118969-16119280,16119390-16119563,
16120411-16120498,16120598-16120611
Length = 808
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +3
Query: 123 YLRNGSNKKIDLHKSNPLDPRFAIVISRHLIIVCNFIN 236
++ NGS KK+ LHK+ LD R I++++ I +++
Sbjct: 653 FMINGSLKKVLLHKNKYLDWRKRIMVAKDAAIGMEYLH 690
>05_03_0017 -
7392742-7393110,7393212-7393319,7393522-7394079,
7394186-7394311,7394396-7394521,7394673-7395137,
7396822-7396901,7397394-7397664
Length = 700
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -1
Query: 433 RLALAETFSSRFGILALDEPTTNLDQENIHSLCAALGEI 317
RL++A +R +L LDEPT+ LD + S+ L ++
Sbjct: 189 RLSIALEILTRPRLLFLDEPTSGLDSASAFSVIETLRQL 227
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,405,780
Number of Sequences: 37544
Number of extensions: 337129
Number of successful extensions: 777
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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