Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0464
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.013
SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.38 
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)               29   2.7  
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)            29   4.7  
SB_13936| Best HMM Match : ABC_tran (HMM E-Value=4.6e-14)              29   4.7  
SB_13019| Best HMM Match : F5_F8_type_C (HMM E-Value=7.4e-23)          28   6.2  

>SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 797

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 18/38 (47%), Positives = 25/38 (65%)
 Frame = -1

Query: 433 RLALAETFSSRFGILALDEPTTNLDQENIHSLCAALGE 320
           R+A A+   S   ++ LDEPT NLD E+I +L AA+ E
Sbjct: 452 RVAFADMALSNPDVVILDEPTNNLDIESIDALAAAINE 489


>SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 683

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 394 ILALDEPTTNLDQENIHSLCAALGEIVQERMMQKNFM-FIIITHDKE 257
           +L LDEPT +LD E I +L  AL +     M +K    F I  H KE
Sbjct: 477 LLVLDEPTNHLDMETIEALAKALRQFKFIEMEKKEGKEFKITNHLKE 523


>SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1503

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = -1

Query: 505  KNGVEIDMRGRCSAGQKV 452
            K  + +DMRGRCSAGQKV
Sbjct: 1466 KGDLALDMRGRCSAGQKV 1483



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 594  NDIDYIEIKTEGN--LTVESERRKYDYRVVHLK 502
            +DID IEI++E          RR Y+YRVV +K
Sbjct: 1434 SDIDTIEIRSEDEDGSGASKARRTYNYRVVMIK 1466


>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
          Length = 474

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 269 GDNNKHKVFLHHSLLDYFTKGCTQTVNVFLIQICCWFIQSKY 394
           G    HK  L H L  Y  K     ++ +L+ + CW + +K+
Sbjct: 263 GAKAMHKAVLEHQLFYYSPKVRRSVIDHYLLSMPCWALPAKW 304


>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
          Length = 1197

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = +2

Query: 278 NKHKVFLHHSLLDYFTKGCTQTVNVFLIQICCWFIQSKYSKPGTECL 418
           N+H+  +   +LD  ++ C   + + L+    + + + Y+KP   CL
Sbjct: 230 NRHRTSVCRKILDAASQFCYGNIAIILVITVTYEVSTAYTKPVPACL 276


>SB_13936| Best HMM Match : ABC_tran (HMM E-Value=4.6e-14)
          Length = 441

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 394 ILALDEPTTNLDQENIHSLCAALGE 320
           +L LDEPT +LD E I +L  A+ +
Sbjct: 356 MLLLDEPTNHLDMETIDALADAIND 380


>SB_13019| Best HMM Match : F5_F8_type_C (HMM E-Value=7.4e-23)
          Length = 498

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 580 VINIITSVYLSPKFPDNHVGYFPFSLYETP 669
           +I++IT + LS  +  N VG+F  S+ E+P
Sbjct: 188 IIDVITGINLSRHWKTNIVGFFRTSVIESP 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,152,977
Number of Sequences: 59808
Number of extensions: 441775
Number of successful extensions: 777
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)