Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0464
(694 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 89 4e-18
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 89 4e-18
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 89 4e-18
Z75537-2|CAA99835.1| 622|Caenorhabditis elegans Hypothetical pr... 33 0.26
U10414-9|AAA19072.1| 712|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z82059-12|CAB04880.1| 622|Caenorhabditis elegans Hypothetical p... 29 2.4
AL032665-2|CAA21772.1| 622|Caenorhabditis elegans Hypothetical ... 29 2.4
AF000264-2|AAC71121.1| 761|Caenorhabditis elegans Half transpor... 29 4.2
U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug resis... 28 7.3
U40427-1|AAA81467.2| 798|Caenorhabditis elegans Hypothetical pr... 28 7.3
AF106577-13|AAC78186.1| 465|Caenorhabditis elegans Hypothetical... 28 7.3
U53151-5|AAB37068.1| 476|Caenorhabditis elegans Hypothetical pr... 27 9.6
U20783-1|AAC46845.1| 535|Caenorhabditis elegans unknown protein. 27 9.6
AF003385-4|AAB54244.1| 333|Caenorhabditis elegans Hypothetical ... 27 9.6
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 88.6 bits (210), Expect = 4e-18
Identities = 41/92 (44%), Positives = 60/92 (65%), Gaps = 8/92 (8%)
Frame = -1
Query: 505 KNGVEIDMRGRCSAGQKVLACLIIRLALAETFSSRFGILALDEPTTNLDQENIHSLCAAL 326
+ G E++MRGRCSAGQK+LA L+IR+ALAE F ++ALDEPTTNLD+ + + L
Sbjct: 1177 ETGTEVEMRGRCSAGQKMLASLLIRIALAEVFGGSCSMIALDEPTTNLDESKVEGMAIVL 1236
Query: 325 GEIVQER--------MMQKNFMFIIITHDKEL 254
+I+ ER + ++ ++ITHD+ L
Sbjct: 1237 ADIIAERRGFDENGKLRGRDMQMVVITHDERL 1268
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = -2
Query: 672 LWSFIERKWKISNMIIRELWRKIYRGNDIDYIEIKTEGNLTVESERRKYDYRVV 511
L F K N II +LWRK+Y DI I I+++ S++ Y+Y V+
Sbjct: 1120 LIQFHSEKMGRVNGIIDDLWRKVYNSTDITTIRIRSDATSETSSKKVAYEYNVM 1173
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical protein
T04H1.4a protein.
Length = 1298
Score = 88.6 bits (210), Expect = 4e-18
Identities = 41/92 (44%), Positives = 60/92 (65%), Gaps = 8/92 (8%)
Frame = -1
Query: 505 KNGVEIDMRGRCSAGQKVLACLIIRLALAETFSSRFGILALDEPTTNLDQENIHSLCAAL 326
+ G E++MRGRCSAGQK+LA L+IR+ALAE F ++ALDEPTTNLD+ + + L
Sbjct: 1163 ETGTEVEMRGRCSAGQKMLASLLIRIALAEVFGGSCSMIALDEPTTNLDESKVEGMAIVL 1222
Query: 325 GEIVQER--------MMQKNFMFIIITHDKEL 254
+I+ ER + ++ ++ITHD+ L
Sbjct: 1223 ADIIAERRGFDENGKLRGRDMQMVVITHDERL 1254
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = -2
Query: 672 LWSFIERKWKISNMIIRELWRKIYRGNDIDYIEIKTEGNLTVESERRKYDYRVV 511
L F K N II +LWRK+Y DI I I+++ S++ Y+Y V+
Sbjct: 1106 LIQFHSEKMGRVNGIIDDLWRKVYNSTDITTIRIRSDATSETSSKKVAYEYNVM 1159
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 88.6 bits (210), Expect = 4e-18
Identities = 41/92 (44%), Positives = 60/92 (65%), Gaps = 8/92 (8%)
Frame = -1
Query: 505 KNGVEIDMRGRCSAGQKVLACLIIRLALAETFSSRFGILALDEPTTNLDQENIHSLCAAL 326
+ G E++MRGRCSAGQK+LA L+IR+ALAE F ++ALDEPTTNLD+ + + L
Sbjct: 1163 ETGTEVEMRGRCSAGQKMLASLLIRIALAEVFGGSCSMIALDEPTTNLDESKVEGMAIVL 1222
Query: 325 GEIVQER--------MMQKNFMFIIITHDKEL 254
+I+ ER + ++ ++ITHD+ L
Sbjct: 1223 ADIIAERRGFDENGKLRGRDMQMVVITHDERL 1254
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = -2
Query: 672 LWSFIERKWKISNMIIRELWRKIYRGNDIDYIEIKTEGNLTVESERRKYDYRVV 511
L F K N II +LWRK+Y DI I I+++ S++ Y+Y V+
Sbjct: 1106 LIQFHSEKMGRVNGIIDDLWRKVYNSTDITTIRIRSDATSETSSKKVAYEYNVM 1159
>Z75537-2|CAA99835.1| 622|Caenorhabditis elegans Hypothetical
protein F18E2.2 protein.
Length = 622
Score = 32.7 bits (71), Expect = 0.26
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = -1
Query: 433 RLALAETFSSRFGILALDEPTTNLDQENIHSLCAALGEIVQERMMQKNFMFIIITHDKEL 254
R+AL I+ LDEPT NLD E+I +L A+ + N +++THD+ L
Sbjct: 529 RVALCNLALGGPDIIILDEPTNNLDIESIDALAEAIRDF--------NGGVVMVTHDERL 580
>U10414-9|AAA19072.1| 712|Caenorhabditis elegans Hypothetical
protein F42A10.1 protein.
Length = 712
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = -1
Query: 433 RLALAETFSSRFGILALDEPTTNLDQENIHSLCAALGEIVQERMMQKNFMFIIITHDKEL 254
RLA A + L LDEPT +LD E + +L AL N ++++HD++L
Sbjct: 623 RLAFANLALMQPNYLILDEPTNHLDVETVEALGKALNVF--------NGGVVLVSHDEQL 674
>Z82059-12|CAB04880.1| 622|Caenorhabditis elegans Hypothetical
protein T27E9.7 protein.
Length = 622
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = -1
Query: 436 IRLALAETFSSRFGILALDEPTTNLDQENIHSLCAALGEIVQERMMQKNFMFIIITHDKE 257
+R+ALA + +L LDEPT +LD E C L +E + Q ++++H ++
Sbjct: 233 MRIALARALFLKPSVLLLDEPTNHLDLE----ACVWL----EEELAQYKRTLLVVSHSQD 284
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 394 ILALDEPTTNLDQENIHSLCAAL 326
+L LDEPT +LD E+I +L A+
Sbjct: 535 LLLLDEPTNHLDMESIDALAEAI 557
>AL032665-2|CAA21772.1| 622|Caenorhabditis elegans Hypothetical
protein T27E9.7 protein.
Length = 622
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = -1
Query: 436 IRLALAETFSSRFGILALDEPTTNLDQENIHSLCAALGEIVQERMMQKNFMFIIITHDKE 257
+R+ALA + +L LDEPT +LD E C L +E + Q ++++H ++
Sbjct: 233 MRIALARALFLKPSVLLLDEPTNHLDLE----ACVWL----EEELAQYKRTLLVVSHSQD 284
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 394 ILALDEPTTNLDQENIHSLCAAL 326
+L LDEPT +LD E+I +L A+
Sbjct: 535 LLLLDEPTNHLDMESIDALAEAI 557
>AF000264-2|AAC71121.1| 761|Caenorhabditis elegans Half transporter
(pgp related)protein 2 protein.
Length = 761
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 433 RLALAETFSSRFGILALDEPTTNLDQENIHSLCAALGEIVQER 305
R+A+A +L LDE T+ LD E+ + AL QER
Sbjct: 660 RIAIARALVRNPAVLILDEATSALDTESEALVQQALSRCAQER 702
>U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug resistance
protein familyprotein 6 protein.
Length = 1396
Score = 27.9 bits (59), Expect = 7.3
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = -1
Query: 520 QSSTSKNG--VEIDMRG-RCSAGQKVLACLIIRLALAETFSSRFGILALDEPTTNLD 359
+S T + G VE+ RG S GQ+ L CL A R IL +DE T N+D
Sbjct: 1251 RSITKEKGLNVELGQRGVSLSVGQRQLFCL------ARAMIHRSKILVIDEATANVD 1301
>U40427-1|AAA81467.2| 798|Caenorhabditis elegans Hypothetical
protein F43C9.3 protein.
Length = 798
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 233 QCSQVTL*F-FVMGDNNKHKVFLHHSLLDYFTKGCTQTVNVFLI 361
QCS+ L + F +N H++ L H ++ ++GC N+F I
Sbjct: 359 QCSKAVLHYMFQTKENRLHRISLKHFPIESMSRGC--RANIFAI 400
>AF106577-13|AAC78186.1| 465|Caenorhabditis elegans Hypothetical
protein F46F5.7 protein.
Length = 465
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 675 VLWSFIERKWKISNMIIRELWRKIYRGNDIDYI-EIKTEGNLTVE 544
++WS E KW I + ++ Y G +DY+ +IK E +++
Sbjct: 281 LIWSRGETKWTIFADLDERIYMTNYTGTILDYVRDIKNESIASIQ 325
>U53151-5|AAB37068.1| 476|Caenorhabditis elegans Hypothetical
protein T05B11.4 protein.
Length = 476
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 675 VLWSFIERKWKISNMIIRELWRKIYRGNDIDYIE-IKTEGNLTVE 544
++WS E KW I + ++ Y G +DY++ +K E +++
Sbjct: 292 LIWSRGETKWTIFADLDERIYMTNYTGTILDYVQVVKNESIASIQ 336
>U20783-1|AAC46845.1| 535|Caenorhabditis elegans unknown protein.
Length = 535
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = -1
Query: 436 IRLALAETFSSRFGILALDEPTTNLDQENIHSLCAALGEIVQERMMQKNFMFIIITHDKE 257
+R+ LA + +L LDEPT +LD E C L +E + Q ++++H ++
Sbjct: 232 MRIRLARALFLKPSVLLLDEPTNHLDLE----ACVWL----EEELAQYKRTLLVVSHSQD 283
>AF003385-4|AAB54244.1| 333|Caenorhabditis elegans Hypothetical
protein R08F11.2 protein.
Length = 333
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 84 APPFTY-C*NKICMYLRNGSNKKIDLHKSNP 173
AP Y C NK +RNG KKI L KSNP
Sbjct: 289 APAIIYLCLNKT---IRNGIMKKIGLKKSNP 316
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,996,092
Number of Sequences: 27780
Number of extensions: 335672
Number of successful extensions: 847
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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