Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0464
(694 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50... 111 6e-25
At3g54540.1 68416.m06035 ABC transporter family protein similar ... 31 0.55
At5g60790.1 68418.m07627 ABC transporter family protein similar ... 31 0.73
At4g01040.1 68417.m00141 glycosyl hydrolase family 18 protein co... 31 0.73
At1g67940.1 68414.m07758 ABC transporter family protein similar ... 31 0.73
At5g09930.1 68418.m01148 ABC transporter family protein 29 2.2
At5g03910.1 68418.m00371 ABC transporter family protein ABC-type... 29 2.2
At5g64840.1 68418.m08157 ABC transporter family protein 28 5.1
At1g55350.4 68414.m06326 calpain-type cysteine protease family i... 28 5.1
At1g55350.3 68414.m06325 calpain-type cysteine protease family i... 28 5.1
At1g55350.2 68414.m06324 calpain-type cysteine protease family i... 28 5.1
At1g55350.1 68414.m06323 calpain-type cysteine protease family i... 28 5.1
At3g21090.1 68416.m02666 ABC transporter family protein similar ... 28 6.8
At3g47750.1 68416.m05202 ABC transporter family protein probable... 27 8.9
At1g76830.1 68414.m08941 F-box family protein contains F-box dom... 27 8.9
At1g51500.1 68414.m05796 ABC transporter family protein similar ... 27 8.9
>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
identical to DNA repair-recombination protein GI:7110148
from [Arabidopsis thaliana]
Length = 1316
Score = 111 bits (266), Expect = 6e-25
Identities = 70/152 (46%), Positives = 90/152 (59%), Gaps = 2/152 (1%)
Frame = -1
Query: 688 ALNKCLMEFHREKMENIQHDYQGTLAKDI--QR**Y*LH*NQD*RQLNCRIRTTQI*LQS 515
AL+K LM FH KME I + + Q Y + + D R + ++ +Q+
Sbjct: 1142 ALDKALMRFHTMKMEEINKIIRELWQQTYRGQDMDY-IRIHSDSEGAGTRSYSYKVLMQT 1200
Query: 514 STSKNGVEIDMRGRCSAGQKVLACLIIRLALAETFSSRFGILALDEPTTNLDQENIHSLC 335
+ E++MRGRCSAGQKVLA LIIRLALAETF GILALDEPTTNLD N SL
Sbjct: 1201 GDT----ELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNSESLA 1256
Query: 334 AALGEIVQERMMQKNFMFIIITHDKEL*SHLG 239
AL I+++R Q+NF I+ITHD+ +G
Sbjct: 1257 GALLRIMEDRKGQENFQLIVITHDERFAQMIG 1288
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/54 (40%), Positives = 31/54 (57%)
Frame = -2
Query: 672 LWSFIERKWKISNMIIRELWRKIYRGNDIDYIEIKTEGNLTVESERRKYDYRVV 511
L F K + N IIRELW++ YRG D+DYI I ++ + R Y Y+V+
Sbjct: 1147 LMRFHTMKMEEINKIIRELWQQTYRGQDMDYIRIHSDSE---GAGTRSYSYKVL 1197
>At3g54540.1 68416.m06035 ABC transporter family protein similar to
ABC50 GI:10863747 from [Rattus norvegicus]
Length = 723
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -1
Query: 433 RLALAETFSSRFGILALDEPTTNLDQENIHSLCAALGE 320
R+ S+ IL LDEPT +LD ++I +L AL E
Sbjct: 627 RVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE 664
>At5g60790.1 68418.m07627 ABC transporter family protein similar to
ABC transporter homolog PnATH GI:7573600 from [Populus
nigra]
Length = 595
Score = 31.1 bits (67), Expect = 0.73
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -1
Query: 394 ILALDEPTTNLDQENIHSLCAALGE 320
+L LDEPT +LD E I SL AL E
Sbjct: 519 MLLLDEPTNHLDIETIDSLAEALNE 543
>At4g01040.1 68417.m00141 glycosyl hydrolase family 18 protein
contains Pfam profile PF00704: Glycosyl hydrolases
family 18
Length = 430
Score = 31.1 bits (67), Expect = 0.73
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 591 DIDYIEIKTEGNLTVESERRKYDYRVVHLKTVWKS 487
DI++ EI TE + E+ R YDY V+ T W S
Sbjct: 78 DINFQEILTEHSKASENSTRHYDYPVLAYITPWNS 112
>At1g67940.1 68414.m07758 ABC transporter family protein similar to
ABC transporters: GB:BAA77876 [Escherichia coli],
GB:P07655 [Escherichia coli]; contains Pfam profile:
PF00005 ABC transporter
Length = 263
Score = 31.1 bits (67), Expect = 0.73
Identities = 16/56 (28%), Positives = 32/56 (57%)
Frame = -1
Query: 433 RLALAETFSSRFGILALDEPTTNLDQENIHSLCAALGEIVQERMMQKNFMFIIITH 266
R+ALA T ++ +L LDEPT+ LD + + + +++ + Q+ +I++H
Sbjct: 167 RVALARTLANEPEVLLLDEPTSALDPISTEN----IEDVIVKLKKQRGITTVIVSH 218
>At5g09930.1 68418.m01148 ABC transporter family protein
Length = 678
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/69 (27%), Positives = 36/69 (52%)
Frame = -1
Query: 436 IRLALAETFSSRFGILALDEPTTNLDQENIHSLCAALGEIVQERMMQKNFMFIIITHDKE 257
+R++L + +L LDEPT +LD + I E ++ +++++ +II+HD+
Sbjct: 252 MRMSLGKILLQNPDLLLLDEPTNHLDLDTI--------EWLEGYLIKQDVPMVIISHDRA 303
Query: 256 L*SHLGTLI 230
L T I
Sbjct: 304 FLDQLCTKI 312
>At5g03910.1 68418.m00371 ABC transporter family protein ABC-type
transport protein sll1276, Synechocystis sp., PIR:S77239
Length = 634
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/59 (38%), Positives = 30/59 (50%)
Frame = -1
Query: 433 RLALAETFSSRFGILALDEPTTNLDQENIHSLCAALGEIVQERMMQKNFMFIIITHDKE 257
RLA+A + IL LDE T+ LD SL L ER+MQ + + I+I H E
Sbjct: 543 RLAIARALYQKSSILILDEATSALD-----SLSELLVREALERVMQDHTV-IVIAHRLE 595
>At5g64840.1 68418.m08157 ABC transporter family protein
Length = 692
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/69 (27%), Positives = 35/69 (50%)
Frame = -1
Query: 436 IRLALAETFSSRFGILALDEPTTNLDQENIHSLCAALGEIVQERMMQKNFMFIIITHDKE 257
+R++L + +L LDEPT +LD + I E ++ + +++ +II+HD+
Sbjct: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDTI--------EWLEGYLQKQDVPMVIISHDRA 317
Query: 256 L*SHLGTLI 230
L T I
Sbjct: 318 FLDQLCTKI 326
>At1g55350.4 68414.m06326 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 28.3 bits (60), Expect = 5.1
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -2
Query: 675 VLWSFIERKWKISNMIIRELWRKIYRGNDIDYI 577
+LW+ R W++ + I W K+ +G +D +
Sbjct: 29 ILWAVNWRPWRLYSWIFARKWPKVLQGPQLDIL 61
>At1g55350.3 68414.m06325 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 28.3 bits (60), Expect = 5.1
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -2
Query: 675 VLWSFIERKWKISNMIIRELWRKIYRGNDIDYI 577
+LW+ R W++ + I W K+ +G +D +
Sbjct: 29 ILWAVNWRPWRLYSWIFARKWPKVLQGPQLDIL 61
>At1g55350.2 68414.m06324 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 28.3 bits (60), Expect = 5.1
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -2
Query: 675 VLWSFIERKWKISNMIIRELWRKIYRGNDIDYI 577
+LW+ R W++ + I W K+ +G +D +
Sbjct: 29 ILWAVNWRPWRLYSWIFARKWPKVLQGPQLDIL 61
>At1g55350.1 68414.m06323 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 28.3 bits (60), Expect = 5.1
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -2
Query: 675 VLWSFIERKWKISNMIIRELWRKIYRGNDIDYI 577
+LW+ R W++ + I W K+ +G +D +
Sbjct: 29 ILWAVNWRPWRLYSWIFARKWPKVLQGPQLDIL 61
>At3g21090.1 68416.m02666 ABC transporter family protein similar to
ATP-binding cassette, sub-family G (WHITE), member 2
GB:NP_036050 from [Mus musculus]
Length = 691
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -1
Query: 433 RLALAETFSSRFGILALDEPTTNLDQENIHSLCAALGEIVQE 308
R+++A +R IL LDEPT+ LD + + AL I ++
Sbjct: 176 RVSIALEILTRPQILFLDEPTSGLDSASAFFVIQALRNIARD 217
>At3g47750.1 68416.m05202 ABC transporter family protein probable
transport protein ABC-C, Homo sapiens, PIR2:S71363
Length = 944
Score = 27.5 bits (58), Expect = 8.9
Identities = 24/84 (28%), Positives = 39/84 (46%)
Frame = -1
Query: 508 SKNGVEIDMRGRCSAGQKVLACLIIRLALAETFSSRFGILALDEPTTNLDQENIHSLCAA 329
S+ GV G+ S G K RL++A + ++ +DEP+T LD + SL A
Sbjct: 749 SREGVADKPAGKYSGGMKR------RLSVAISLIGSPKVVYMDEPSTGLDPASRRSLWTA 802
Query: 328 LGEIVQERMMQKNFMFIIITHDKE 257
+ + +K+ I+ TH E
Sbjct: 803 I------KGAKKHTAIILTTHSME 820
>At1g76830.1 68414.m08941 F-box family protein contains F-box domain
Pfam:PF00646
Length = 373
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -2
Query: 672 LWSFIERKWKISNMIIRELWRKIYRGN-DIDYIEIKTEG 559
+W+ RKW +++++IR+ W+ + N D DY T+G
Sbjct: 277 VWNVDTRKWSMNSILIRK-WKDYAQDNEDYDYRFRGTQG 314
>At1g51500.1 68414.m05796 ABC transporter family protein similar to
GB:AAF61569 from [Bombyx mori]
Length = 687
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -1
Query: 433 RLALAETFSSRFGILALDEPTTNLDQENIHSLCAALGEIVQE 308
R+++A +R IL LDEPT+ LD + + AL I ++
Sbjct: 175 RVSVALEILTRPQILFLDEPTSGLDSASAFFVIQALRNIARD 216
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,793,238
Number of Sequences: 28952
Number of extensions: 299095
Number of successful extensions: 723
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -