Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0463
         (658 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      24   0.96 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   0.96 

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +2

Query: 344 TSDRESSRYGIVQQASIDSTDSRICYLTSSEI 439
           TSDR+ S+YG++ + ++++    + Y + + I
Sbjct: 62  TSDRDRSKYGMLARLAVEAGFDWVYYESRAHI 93


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 192 QRRASRPSVYTRPRGPTRQYTTRTEM 115
           +RRA+RP V T PR    + ++ T M
Sbjct: 41  RRRAARPGVVTTPRWGCARASSATTM 66


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,634
Number of Sequences: 336
Number of extensions: 2754
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)