Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0463
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    29   0.59 
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    29   0.59 
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    27   1.8  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    27   1.8  
SPAC10F6.16 |mug134||endosulphine family protein|Schizosaccharom...    27   2.4  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   4.2  
SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.5  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    25   9.6  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    25   9.6  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    25   9.6  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    25   9.6  

>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 236 SPTRGQFNDSGYRSNRADSFEQRGVFDRQDSVRSEYTSDRESSRY 370
           S +RG   D  YR  R +  ++R     +DS R +Y+  R   RY
Sbjct: 22  SRSRGDQRDRDYREYRRNYRDERSSRRYEDSQRRDYSPARRRDRY 66


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
            reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = -1

Query: 406  VGTVDGSLLHDPVARRLPVTCVFGAHTVLPIKHTPLFEAVRSVAPIAGVVELPSCRRLGS 227
            VGT+ G  + +P    L +  V GAH   P  ++     V + A +AG  EL  C  L S
Sbjct: 954  VGTIGGGTVLEPQGAMLDLLGVRGAHMTSPGDNSRQLARVVAAAVMAG--ELSLCSALAS 1011


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 344 TSDRESSRYGIVQQASIDSTDSRICYLTSSEISDDDRMSLTTAVSDEE 487
           T DRE++R    Q   + +    + YL  SEI  D   ++  A++ +E
Sbjct: 191 TDDRENARLAAEQGIQVSTLKDYVQYLPDSEILLDMVSAIADAIASKE 238


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 437 ISDDDRMSLTTAVSDEEDPGESAM--ILLTKASRLVQPQHLSTAPAQSGRQ 583
           +SDD     TT  +D+ DP  +A+   L     +++ P   S A    GRQ
Sbjct: 73  VSDDTPSEATTTTNDDRDPKYNALGNNLDAVRGKVISPTQGSDARGPDGRQ 123


>SPAC10F6.16 |mug134||endosulphine family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 291 ASNKGVCLIGKTVCAPNTQVTGSLRATGSCNKLPS 395
           AS+ G+  IGK + +P+T +   + + GS NK PS
Sbjct: 75  ASDSGITCIGKEIPSPDT-IPHRVVSAGSPNKEPS 108


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/72 (22%), Positives = 31/72 (43%)
 Frame = +3

Query: 231 PSLRHEGSSTTPAIGATERTASNKGVCLIGKTVCAPNTQVTGSLRATGSCNKLPSTVPTL 410
           P++    + T+ +I +TE   ++  V +   T  +    V+ S         +P+T  TL
Sbjct: 209 PAVSSSETLTSVSITSTESAYTSSSVDIAASTTASSTLPVSTSEATVSFSTDIPATPSTL 268

Query: 411 GSAT*HRARYLM 446
            S     + YL+
Sbjct: 269 SSPASSSSSYLV 280


>SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 335 SEYTSDRESSRYGIVQQASIDSTDSRICYLTSSEISDDDRMSLTTAVSDEED 490
           S +T   ESS    +  AS  +++SR+  L++  I D D  S      ++ D
Sbjct: 11  SRFTFSSESSSSSSILFASTLASESRLSDLSTGSIRDSDCFSFNVHELNQSD 62


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 428 SSEISDDDRMSLTTAVSDEEDPGESAMILLTKASRLVQP--QHLSTAPAQS 574
           SS +S  D  +L T +SD   PG S     T  S L  P  +  S +P QS
Sbjct: 376 SSAVSLSDTTNLNTPISDIPSPGSS-----TTCSNLSSPHIKRKSRSPPQS 421


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 392 IDSTDSRICYLTSSEISDDDRMSLTTAVSD 481
           +D  DS   Y    ++S DD   L++ +SD
Sbjct: 350 MDEEDSEDAYTDEEDLSSDDEEILSSEISD 379


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 392 WKLVARSRSAKTPGHLCIRSAHCLADQTHPFVRS 291
           WK    S   KTP  +C R+   +   + PFV S
Sbjct: 210 WKHCHYSLDPKTPLAMCFRNLAPVPSDSSPFVNS 243


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 573 DCAGAVERCCGCTSLLAFVRRIIALSPGSSSSDTAVVNDIRS 448
           + A AV+R    T+     + +    PGS   DTAV N IRS
Sbjct: 356 NAASAVKRSVFWTAYYTKAKLMRHNLPGSCVLDTAVFNKIRS 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,547,039
Number of Sequences: 5004
Number of extensions: 49502
Number of successful extensions: 173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)