Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0463
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0064 - 15600467-15600528,15600606-15600647,15600732-156011... 32 0.46
10_08_0824 + 20821724-20822137,20822457-20822543,20822729-208228... 31 0.81
03_06_0285 + 32848085-32848988,32849057-32849245,32850136-328503... 30 1.4
02_03_0131 - 15576422-15577021 30 1.4
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 30 1.9
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 30 1.9
05_03_0251 + 10987441-10988961,10989731-10989823,10989937-10990053 29 2.5
10_01_0076 - 987092-987671,987747-987812,988201-988363,988467-98... 29 3.3
05_06_0059 - 25264704-25266032 29 3.3
06_01_1138 - 9429447-9433868 29 4.3
11_06_0490 - 24293218-24293373,24293454-24293521,24293845-242939... 28 5.7
04_04_1420 + 33441260-33443704 28 5.7
06_03_0163 - 17380601-17380710,17380796-17380856,17381076-173811... 28 7.5
03_05_0865 - 28365430-28367640 28 7.5
11_06_0065 - 19736265-19737302 27 9.9
08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435... 27 9.9
04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544... 27 9.9
>01_04_0064 -
15600467-15600528,15600606-15600647,15600732-15601107,
15601186-15601447,15602992-15603158,15603344-15603484,
15603575-15603643
Length = 372
Score = 31.9 bits (69), Expect = 0.46
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 3 ERERERDRGYLSDHNTRDRVRDRDQGYLSDHQSSFVSTSR 122
+RERERDR D R +DR GY SD + S +SR
Sbjct: 314 DRERERDREADRDRQRRHHSKDRSSGY-SDKEKSRHRSSR 352
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 6 RERERDRGYLSDHNTRDRVRDRD-QGYLSDHQ 98
RERERDR D ++R R DRD +G SD +
Sbjct: 285 RERERDRSRGRDRDSRGRDSDRDSKGRDSDRE 316
>10_08_0824 +
20821724-20822137,20822457-20822543,20822729-20822829,
20822917-20822967,20823616-20823790,20823878-20824192,
20824504-20824707,20824799-20825314,20825400-20825609,
20826092-20826280,20827254-20827405,20827685-20827837,
20827925-20828006,20828086-20828475
Length = 1012
Score = 31.1 bits (67), Expect = 0.81
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -2
Query: 240 GDWAVSPRASGGGPAVQRRASRPSVYTRP 154
G WA S A GGG A RR RP + RP
Sbjct: 23 GGWAASSSAGGGG-AASRRRRRPGLSCRP 50
>03_06_0285 +
32848085-32848988,32849057-32849245,32850136-32850311,
32850569-32851141
Length = 613
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = -2
Query: 219 RASGGGPAVQRRASRPSVYT-RPRGPTRQYTTRTEMYSRS*ID-GR*GTLDHD-PALCPS 49
RAS GGP +A R + YT P P T T + S S G +D PA P
Sbjct: 490 RASTGGPMPPAKAGRLTDYTGTPSSPATTTTNATFIRSPSHASYGTASPYSYDRPAAHPL 549
Query: 48 YCG 40
YCG
Sbjct: 550 YCG 552
>02_03_0131 - 15576422-15577021
Length = 199
Score = 30.3 bits (65), Expect = 1.4
Identities = 31/100 (31%), Positives = 39/100 (39%)
Frame = +3
Query: 3 ERERERDRGYLSDHNTRDRVRDRDQGYLSDHQSSFVSTSRCASCIGESARAAWYRHSDGW 182
ER+RE DR DH RDR ++RD+ D + R S SA + RHS
Sbjct: 23 ERDRELDRPRDRDHRDRDRDKERDRDRDRDRERRRGERDRKRS-RSPSADRSHRRHSHS- 80
Query: 183 XXXXXXXXXXSPWDSLPSLRHEGSSTTPAIGATERTASNK 302
SP R +GS PA AT+ K
Sbjct: 81 -HSHRGRSSPSPDAGRHKRRRDGS---PAAAATDHKDDKK 116
>10_08_0106 +
14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +3
Query: 3 ERERERDRGYLSDHNTRDRVRDRDQ 77
ERERERDR D + RD+ RDRD+
Sbjct: 792 ERERERDRDQNRDRD-RDQERDRDR 815
>03_03_0008 -
13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +2
Query: 272 RSNRADSFEQRGVFDRQDSVRSEYTSDRESSRYGIVQQASIDSTDSRICYLTSSEISDDD 451
+++ ++S Q SV SE D + I ++ +DS + C L SSE+ +DD
Sbjct: 532 KTHSSESILQNNSVPASASVPSEAKDDSHVTEGNICEETHVDSKTTD-CLLVSSEVGNDD 590
>05_03_0251 + 10987441-10988961,10989731-10989823,10989937-10990053
Length = 576
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Frame = +2
Query: 287 DSFEQRGVFDRQDSVRSEYTSDRESSRYGIVQQAS-IDSTDSRICYLTSSEI---SDD-- 448
DS RG+ D E++SD+E+ Y + + +D +++ L + + DD
Sbjct: 272 DSSSHRGIMDNHCKCGEEFSSDKEAPAYHLFENYDFVDKHETKEVVLGDTVVLTFVDDLA 331
Query: 449 -DRMSLTTAVSDEEDPGESAMILLTKASRLVQPQHL 553
D +S+++DP + +L A Q Q +
Sbjct: 332 NDDSEYREDISEQKDPNNLSGLLDNVADIFYQQQEI 367
>10_01_0076 -
987092-987671,987747-987812,988201-988363,988467-988548,
989153-989202,989237-989270,990177-990239,990339-990403,
990485-990560,991274-991353,991514-991628,991729-991830
Length = 491
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = +3
Query: 6 RERERDRGYLSD--HNTRDRVRDRDQG 80
R+RERD G D + RDR RDRD+G
Sbjct: 350 RDRERDHGRDRDRERDRRDRDRDRDRG 376
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 3 ERERERDRGYLSDHNTRDRVRDRDQGYLSD 92
ER+ RDR D RDR RDR + Y D
Sbjct: 353 ERDHGRDRDRERDRRDRDRDRDRGRDYERD 382
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 3 ERERERDRGYLSDHNTRDRVRDRD 74
ER RERDR + + DR R+RD
Sbjct: 306 ERPRERDRDERTRERSHDRTRERD 329
>05_06_0059 - 25264704-25266032
Length = 442
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/58 (34%), Positives = 22/58 (37%)
Frame = +3
Query: 3 ERERERDRGYLSDHNTRDRVRDRDQGYLSDHQSSFVSTSRCASCIGESARAAWYRHSD 176
+R R+R G SD DR RDR G SD R G S R R D
Sbjct: 88 DRARDRRHGGRSDREVFDRGRDRRHGGRSDRDREVFDRGRDRRHGGRSDREELDRERD 145
>06_01_1138 - 9429447-9433868
Length = 1473
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/74 (25%), Positives = 33/74 (44%)
Frame = +2
Query: 344 TSDRESSRYGIVQQASIDSTDSRICYLTSSEISDDDRMSLTTAVSDEEDPGESAMILLTK 523
TSD YG Q S S + T +++ DD++ ++ + G+S + K
Sbjct: 291 TSDHVGGEYGRWQAYSYRSDVYNEIHTTIAQMKVDDKIEEIKGKIEQLESGKSNNLEKNK 350
Query: 524 ASRLVQPQHLSTAP 565
+S+ + P LS P
Sbjct: 351 SSKTLNPITLSDKP 364
>11_06_0490 -
24293218-24293373,24293454-24293521,24293845-24293986,
24294079-24294699,24294791-24294871,24295002-24295072,
24296106-24296176,24296568-24296675,24296786-24297024,
24297493-24297657
Length = 573
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +3
Query: 3 ERERERDRGYLSDHN-TRDRVRDRDQG 80
ERERERD+ D + RDR RDRD+G
Sbjct: 70 ERERERDKDKERDRDRDRDR-RDRDRG 95
>04_04_1420 + 33441260-33443704
Length = 814
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 257 NDSGYRSNRADSFEQRGVFDRQDSVRSEYTSDRESSRYGIVQQASID 397
N + Y S+R SF++RGVF D ++ SD G++++ ++D
Sbjct: 218 NRTAYNSSRYGSFDRRGVFTASDQLQFN-ASDMGDE--GVMRRLTLD 261
>06_03_0163 -
17380601-17380710,17380796-17380856,17381076-17381150,
17381538-17381600,17381679-17381755,17382432-17382515,
17382610-17382654,17382729-17382789,17383658-17384053,
17384220-17384289,17387010-17387083,17387202-17387246,
17387342-17387391,17387846-17387947,17388587-17388620,
17388681-17388758,17388915-17388965,17389082-17389085,
17389182-17389256,17389530-17389624
Length = 549
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 203 PPPLALGLTAQSPTRGQFNDSGYRSNRADSFE 298
PP L +G+ A SPT Q N + +R + E
Sbjct: 149 PPHLVVGMPALSPTMNQGNIAKWRKQEGEKIE 180
>03_05_0865 - 28365430-28367640
Length = 736
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Frame = +3
Query: 3 ERERERDRGYLSDHNTR---DRVRDRDQG 80
+R+R+RDR D ++R DR RDRD+G
Sbjct: 85 DRDRDRDRERRRDDDSRRDRDRDRDRDRG 113
>11_06_0065 - 19736265-19737302
Length = 345
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +2
Query: 386 ASIDSTDSRICYLTSSEISDDDRMSLTTAVSDEEDPGESAMILLTKASRLVQPQ 547
A+ D + I Y T SE SDD++ +V D ES+ I SR+ QPQ
Sbjct: 162 AAADEKEEEIEY-TDSE-SDDEKQFSPVSVLDHPFDFESSPIHKRSPSRVAQPQ 213
>08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,
4351133-4353092,4353465-4353840,4353932-4354326,
4354597-4354765,4355444-4355518,4357699-4357826,
4357988-4358213,4358290-4358417,4358505-4358768
Length = 1520
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 326 SVRSEYTSDRESSRYGIVQQASIDSTDSRICYLTSSEISDDDRMSLTTAVSD 481
SV E ++ ES G +QAS D L+SS+ DD+ +++ A SD
Sbjct: 1470 SVLEEESAGAESEN-GDQEQASSDWASDECSQLSSSDEMPDDKSAISEADSD 1520
>04_03_1018 +
21753634-21753640,21754282-21754315,21754413-21754432,
21754485-21755782
Length = 452
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 219 WDSL-PSLRHEGSSTTPAIGATERTASNKGVCLIGKTVCAPNTQVTGSL 362
W +L P LRH+G + TPA AS+ V + +CA G++
Sbjct: 276 WQALLPLLRHDGPAPTPAPPHDAHAASDAAVRAVA-AICASEPARGGAI 323
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,171,718
Number of Sequences: 37544
Number of extensions: 385821
Number of successful extensions: 1272
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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