Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0463
(658 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12722| Best HMM Match : Oxysterol_BP (HMM E-Value=1.2) 37 0.013
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 31 0.83
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_52683| Best HMM Match : BCNT (HMM E-Value=3) 30 1.9
SB_4548| Best HMM Match : WD40 (HMM E-Value=6.7e-35) 30 1.9
SB_910| Best HMM Match : Cation_efflux (HMM E-Value=0.056) 30 1.9
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 29 3.3
SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_9163| Best HMM Match : XS (HMM E-Value=0.84) 29 3.3
SB_28488| Best HMM Match : PAX (HMM E-Value=0) 29 4.4
SB_13376| Best HMM Match : DUF1213 (HMM E-Value=0.18) 29 4.4
SB_10374| Best HMM Match : Fibrinogen_BP (HMM E-Value=2.2) 29 4.4
SB_27925| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34) 28 7.7
SB_1300| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_12722| Best HMM Match : Oxysterol_BP (HMM E-Value=1.2)
Length = 640
Score = 37.1 bits (82), Expect = 0.013
Identities = 24/55 (43%), Positives = 30/55 (54%)
Frame = +3
Query: 3 ERERERDRGYLSDHNTRDRVRDRDQGYLSDHQSSFVSTSRCASCIGESARAAWYR 167
E RERDR D RDR RDRD+G +DH+ SR C+ S RA++ R
Sbjct: 402 EESRERDRDRDRD---RDRDRDRDRGKHNDHR-----RSRRLGCVDRSIRASYMR 448
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = +3
Query: 261 TPAIGATERTASNKGVCLIGKTVCAPNTQVTGSLRATGSCNKLPSTVPTL 410
TP +T T S G + T+ P+T T S R+T S PST TL
Sbjct: 164 TPGTPSTPSTPSAPGTPITPSTLSTPSTPSTPSTRSTPSTPSTPSTPSTL 213
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = +3
Query: 261 TPAIGATERTASNKGVCLIGKTVCAPNTQVTGSLRATGSCNKLPSTVPTL 410
TP +T T S G + T+ P+T T S R+T S PST TL
Sbjct: 714 TPGTPSTPSTPSAPGTPITPSTLSTPSTPSTPSTRSTPSTPSTPSTPSTL 763
Score = 31.5 bits (68), Expect = 0.62
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +3
Query: 225 SLPSLRHEGSS-TTPAIGATERTASNKGVCLIGKTVCAPNTQVTGSLRATGSCNKLPSTV 401
S PSL H S+ +TP+ +T T S T P+T T S +T S PST
Sbjct: 447 STPSLTHTPSTPSTPSTPSTPSTPSTPSTPSTPSTPSTPSTPSTPSTSSTPSTPSTPSTP 506
Query: 402 PTLGS 416
G+
Sbjct: 507 SAPGT 511
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +3
Query: 258 TTPAIGATERTASNKGVCLIGKTVCAPNTQVTGSLRATGSCNKLPSTVPTLGSAT*HRAR 437
+TP++ +T T S T AP+T T S +T S K PST T + + +R +
Sbjct: 283 STPSMPSTPSTPSTPSTPSTPSTPSAPSTPSTPSTPSTPSTPKTPSTPCTPNTPSTNRKK 342
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 225 SLPSLRHEGSS-TTPAIGATERTASNKGVCLIGKTVCAPNTQVTGSLRATGSCNKLPSTV 401
S PS R S+ +TP+ +T T S + T P+T T S +T S PST
Sbjct: 644 STPSTRSTPSTPSTPSTPSTPSTPSTPSTPSLTHTPSTPSTPSTPSTPSTPSMPNTPSTP 703
Query: 402 PT 407
T
Sbjct: 704 ST 705
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/61 (34%), Positives = 27/61 (44%)
Frame = +3
Query: 225 SLPSLRHEGSSTTPAIGATERTASNKGVCLIGKTVCAPNTQVTGSLRATGSCNKLPSTVP 404
S PS+ + S TP+ +T T G T AP T +T S +T S PST
Sbjct: 692 STPSMPNTPS--TPSTPSTPSTPITPGTPSTPSTPSAPGTPITPSTLSTPSTPSTPSTRS 749
Query: 405 T 407
T
Sbjct: 750 T 750
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +3
Query: 258 TTPAIGATERTASNKGVCLIGKTVCAPNTQVTGSLRATGSCNKLPST 398
+TP++ +T T S T AP+T T S +T S K PST
Sbjct: 833 STPSMPSTPSTPSTPSTPSTPSTPSAPSTPSTPSTPSTPSTPKTPST 879
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +3
Query: 225 SLPSLRHEGSS-TTPAIGATERTASNKGVCLIGKTVCAPNTQVTGSLRATGSCNKLPSTV 401
S PS S+ +TP+ +T T G T AP T +T S +T S PST
Sbjct: 139 STPSTPSTPSTPSTPSTPSTPSTPITPGTPSTPSTPSAPGTPITPSTLSTPSTPSTPSTR 198
Query: 402 PT 407
T
Sbjct: 199 ST 200
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 249 GSSTTPAIGATERTASNKGVCLIGKTVCAPNTQVTGSLRATGSCNKLPSTVPT 407
G+ +TP+ +T T S + T P+T T S +T S PST T
Sbjct: 432 GTPSTPSTPSTPSTPSTPSLTHTPSTPSTPSTPSTPSTPSTPSTPSTPSTPST 484
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +3
Query: 225 SLPSLRHEGSS-TTPAIGATERTASNKGVCLIGKTVCAPNTQVTGSLRATGSCNKLPSTV 401
S+PS S+ +TP+ T T S + T P+T T S +T S PST
Sbjct: 256 SMPSTPSTPSTPSTPSTPCTPNTPSTPSTPSMPSTPSTPSTPSTPSTPSTPSAPSTPSTP 315
Query: 402 PT 407
T
Sbjct: 316 ST 317
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +3
Query: 225 SLPSLRHEGSS-TTPAIGATERTASNKGVCLIGKTVCAPNTQVTGSLRATGSCNKLPSTV 401
S+PS S+ +TP+ T T S + T P+T T S +T S PST
Sbjct: 806 SMPSTPSTPSTPSTPSTPCTPNTPSTPSTPSMPSTPSTPSTPSTPSTPSTPSAPSTPSTP 865
Query: 402 PT 407
T
Sbjct: 866 ST 867
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 31.1 bits (67), Expect = 0.83
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 6 RERERDRGYLSDHNTRDRVRDRDQG 80
R+R+RDRG RDR RDRD+G
Sbjct: 467 RDRDRDRGRDRRDRDRDRDRDRDRG 491
>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2388
Score = 31.1 bits (67), Expect = 0.83
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 350 DRESSRYGIVQQASIDST-DSRICYLTSSEISDDDRMSLTTAVSDEE 487
+ +SS Y + +++T D++ C + DDD MSL++ S+E+
Sbjct: 285 EEQSSLYSDIASTDVETTNDTKSCGKVDDDDDDDDAMSLSSISSNED 331
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 31.1 bits (67), Expect = 0.83
Identities = 36/129 (27%), Positives = 51/129 (39%), Gaps = 7/129 (5%)
Frame = +2
Query: 137 WRVGPRGLV*TLGRLARRCTAGP--PPLA-LGLTAQS-PTRGQFNDS-GYRSNRADSFEQ 301
W GPRG+ +G GP PP G P RG G R F+
Sbjct: 392 WGPGPRGMGPGMGPPRPMGPPGPHGPPFGPRGPPPHGGPPRGPMGPGPGMPPMRPGRFDH 451
Query: 302 RGVF--DRQDSVRSEYTSDRESSRYGIVQQASIDSTDSRICYLTSSEISDDDRMSLTTAV 475
DR D R + DR YG+ + A+ID+T+ Y S SDD+ + ++ +
Sbjct: 452 DSEHSRDRADRDRLARSFDRPHRGYGVSKLATIDATEVYRPY--SQSKSDDEDVCVSGQI 509
Query: 476 SDEEDPGES 502
S G +
Sbjct: 510 SSRARNGRT 518
>SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1499
Score = 31.1 bits (67), Expect = 0.83
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +3
Query: 21 DRGYLSDHNTRDRVRDRDQGYLSDHQSSFVST 116
D GYLS+H + + D GYLS+H SS ST
Sbjct: 685 DTGYLSEHYSTNH----DTGYLSEHYSSSFST 712
>SB_52683| Best HMM Match : BCNT (HMM E-Value=3)
Length = 225
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 3 ERERERDRGYLSDHNTRDRVRDRDQGYLSDHQSS 104
+R+R+ DR Y D+ RDR DRD Y D + S
Sbjct: 177 DRDRDYDRDYDRDYY-RDRDHDRDNRYYEDDRRS 209
>SB_4548| Best HMM Match : WD40 (HMM E-Value=6.7e-35)
Length = 844
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 3 ERERERDRGYLSDHNTRDRVRDRD 74
+R+R+RDR D RDR RDRD
Sbjct: 231 DRDRDRDRDRDRDRGERDRDRDRD 254
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 6 RERERDRGYLSDHNTRDRVRDRDQG 80
R+R+RDR RDR RDRD+G
Sbjct: 221 RDRDRDRMDRDRDRDRDRDRDRDRG 245
>SB_910| Best HMM Match : Cation_efflux (HMM E-Value=0.056)
Length = 416
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 3 ERERERDRGYLSDHNTRDRVRDRDQGYLSDHQ 98
ERE+ERDR +DR RDRD+ D +
Sbjct: 306 EREKERDRNKEDRDRVKDRDRDRDKARDRDRE 337
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Frame = +3
Query: 3 ERERER---DRGYLSDHNT-RDRVRDRDQGYLSDHQSS 104
E+ER+R DR + D + RD+ RDRD+ H+SS
Sbjct: 308 EKERDRNKEDRDRVKDRDRDRDKARDRDRERRDKHKSS 345
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +3
Query: 6 RERE-RDRGYLSDHNTRDRVRDRDQ 77
R+R+ RDR Y DH RDR RDRD+
Sbjct: 254 RDRDYRDRDY-RDHRDRDRDRDRDR 277
>SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 3 ERER-ERDRGYLSDHNTRDRVRDRDQ 77
ER+R ERDRG RDR RDRD+
Sbjct: 150 ERDRGERDRGERDRRRDRDRDRDRDR 175
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/26 (61%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +3
Query: 3 ERER-ERDRGYLSDHNTRDRVRDRDQ 77
ER+R ERDRG D RDR RDRD+
Sbjct: 145 ERDRGERDRGE-RDRGERDRRRDRDR 169
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 3 ERERERDRGYLSDHNTRDRVRDRDQGYLSDH 95
E+ R+RDR RD+ RD+D+ Y D+
Sbjct: 193 EKPRDRDRDRRHRDRDRDKERDKDRDYHRDN 223
>SB_9163| Best HMM Match : XS (HMM E-Value=0.84)
Length = 424
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = -2
Query: 585 SCLPDCA-GAVERCCGCTSLLAFVR---RIIALSPGSSSSDTAVVNDI 454
SCLP CA G CC TSLL R ++ + PG D ++ I
Sbjct: 303 SCLPACAPGCNPLCCSSTSLLHQNRIPPNMVIVEPGPPMQDPSLPGPI 350
>SB_28488| Best HMM Match : PAX (HMM E-Value=0)
Length = 551
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/79 (27%), Positives = 33/79 (41%)
Frame = +2
Query: 296 EQRGVFDRQDSVRSEYTSDRESSRYGIVQQASIDSTDSRICYLTSSEISDDDRMSLTTAV 475
E G+F + VR D SR + A+I TSS S+DD + +
Sbjct: 98 ENPGMFSWE--VRDRLVKDNVCSRCTVPSLAAISQVLKNRIASTSSAASEDDDVFIDVEE 155
Query: 476 SDEEDPGESAMILLTKASR 532
+D+ + +IL TK R
Sbjct: 156 TDDNSNIVAGVILKTKKER 174
>SB_13376| Best HMM Match : DUF1213 (HMM E-Value=0.18)
Length = 1022
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 6 RERERDRGYLSDHNTRDRVRDRDQGYLSDHQSSFVSTSRCASC 134
R R D H+ D+ DR +L Q SF STS ASC
Sbjct: 195 RPRSTDVTSKDVHSRLDKWVDRSSKFLRVKQDSFDSTSSIASC 237
>SB_10374| Best HMM Match : Fibrinogen_BP (HMM E-Value=2.2)
Length = 707
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 255 NCPRVGDWAVSPRASGGGPAVQRRASRPSVYTRPRGPTRQY 133
+CP S A GP RR + PS+ TR RGP R++
Sbjct: 221 SCPTQQCAIPSSEARSRGPT--RRFAIPSIETRSRGPARRF 259
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -2
Query: 189 RRASRPSVYTRPRGPTRQY 133
RR + PS+ TR RGPTR++
Sbjct: 321 RRFAIPSIETRSRGPTRRF 339
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -2
Query: 189 RRASRPSVYTRPRGPTRQY 133
RR + PS+ TR RGPTR++
Sbjct: 337 RRFAIPSIETRSRGPTRRF 355
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -2
Query: 189 RRASRPSVYTRPRGPTRQY 133
RR + PS+ TR RGPTR++
Sbjct: 369 RRFAIPSIETRSRGPTRRF 387
>SB_27925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 430
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -2
Query: 189 RRASRPSVYTRPRGPTRQY 133
RR + PS+ TR RGPTR++
Sbjct: 227 RRFAIPSIETRSRGPTRRF 245
>SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)
Length = 1691
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 216 PWDSLPSL---RHEGSSTTPAIGATERTASNKGVCLIGKTVCAPNTQVTGSLRAT 371
P+++L +L R GSS T + + + C+I +T CA +T +T R+T
Sbjct: 1155 PFETLRTLDVNRKPGSSATN-VSSQSMALKQQRDCVIDQTKCAASTSLTSYFRST 1208
>SB_1300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 3 ERERERDRGYLSDHNTRDRVRDRDQGYLSDHQSS 104
++E ER+R S + RDR R+R +G D+QS+
Sbjct: 94 KQEEERERELASKY--RDRARERREGVNPDYQST 125
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,698,832
Number of Sequences: 59808
Number of extensions: 429376
Number of successful extensions: 1622
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1573
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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