Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0463
(658 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family p... 33 0.17
At5g53440.1 68418.m06641 expressed protein 32 0.29
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 31 0.89
At5g04020.1 68418.m00382 calmodulin-binding protein-related (PIC... 30 1.6
At5g37370.2 68418.m04490 pre-mRNA splicing factor PRP38 family p... 29 2.1
At5g37370.1 68418.m04489 pre-mRNA splicing factor PRP38 family p... 29 2.1
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl... 29 2.1
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 29 2.7
At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protei... 29 3.6
At1g11810.1 68414.m01357 F-box family protein contains Pfam PF00... 29 3.6
At2g26430.1 68415.m03171 ania-6a type cyclin (RCY1) nearly ident... 28 4.8
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 28 4.8
At3g11650.1 68416.m01428 harpin-induced family protein / HIN1 fa... 28 6.3
At5g66670.1 68418.m08404 hypothetical protein contains Pfam:PF05... 27 8.3
At5g58930.1 68418.m07382 expressed protein contains Pfam PF05340... 27 8.3
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 27 8.3
At2g30505.1 68415.m03716 Expressed protein 27 8.3
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 27 8.3
>At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family
protein contains Pfam profile PF03371: PRP38 family
Length = 355
Score = 33.1 bits (72), Expect = 0.17
Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 3 ERERERDRGYLSD-HNTRDRVRDRDQGYLSDHQSSF 107
ERERERDR D H RDR DRD DH +
Sbjct: 216 ERERERDRDRRRDSHRHRDRDYDRDYDMDRDHDRDY 251
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 3 ERERERDRGYLSDHNTRDRVRDRDQGYLSDHQ 98
ER+R+R+RG + + RDR R R + D +
Sbjct: 272 ERDRDRERGRDRERDRRDRARRRSRSRSRDRK 303
>At5g53440.1 68418.m06641 expressed protein
Length = 1181
Score = 32.3 bits (70), Expect = 0.29
Identities = 18/32 (56%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +3
Query: 3 ERERERDRGYLSDHNTRDRV--RDRDQGYLSD 92
ERER RD SD N RDR RDRD+ Y D
Sbjct: 302 ERERNRDYDRESDRNERDRERTRDRDRDYERD 333
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 30.7 bits (66), Expect = 0.89
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +3
Query: 3 ERERERDRGYLSDHNTRDRVRDRDQ 77
+R+RERDRG D + RDR RDRD+
Sbjct: 87 DRDRERDRGRDRDRD-RDRDRDRDR 110
>At5g04020.1 68418.m00382 calmodulin-binding protein-related (PICBP)
contains similarity to potato calmodulin-binding protein
PCBP GI:17933110 from [Solanum tuberosum]
Length = 1495
Score = 29.9 bits (64), Expect = 1.6
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Frame = +2
Query: 269 YRSNRADSFEQRGVFDRQDSVRSEYTSDRESSR-YGIVQQASIDST-DSRICYLTSSEIS 442
+R N D+ + V +D + TS+ SS G+ +++ST D+ +C + E
Sbjct: 679 WRDNE-DTTDLLEVVPAKDLEETNLTSESSSSLCIGMKSDEALESTADASLCNHLAVE-E 736
Query: 443 DDDRMSLTTAVSDEEDPGESAMILLTKASRLVQPQHLSTAPAQSGRQDS 589
+ D ++L + + +EE GES L+ L+Q + ++ R ++
Sbjct: 737 EVDGLALGSFIEEEEKKGESEKQNLSTWRNLIQKHMVMRDNSEGNRNET 785
>At5g37370.2 68418.m04490 pre-mRNA splicing factor PRP38 family
protein (SRL1) contains Pfam profile PF03371: PRP38
family
Length = 385
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 3 ERERERDRGYLSDHNTRDRVRDRDQGYLSDHQS 101
ERERE+DR RDR R+R++ Y +D +S
Sbjct: 256 EREREKDR---ERERGRDRYRERERDYGNDRRS 285
>At5g37370.1 68418.m04489 pre-mRNA splicing factor PRP38 family
protein (SRL1) contains Pfam profile PF03371: PRP38
family
Length = 393
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 3 ERERERDRGYLSDHNTRDRVRDRDQGYLSDHQS 101
ERERE+DR RDR R+R++ Y +D +S
Sbjct: 264 EREREKDR---ERERGRDRYRERERDYGNDRRS 293
>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
identical to ubiquitin-protein ligase 1 [Arabidopsis
thaliana] GI:7108521; E3, HECT-domain protein family;
similar to GI:7108521, GB:AAF36454 from [Arabidopsis
thaliana]
Length = 3891
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +2
Query: 353 RESSRYGIVQQASIDSTDSRICYLTSSEISDDDRMSLTTAVSDEEDPGESAMILLTKASR 532
+ESS +G + S+DS +T S+ ++ R L + + E ++ ++ KA R
Sbjct: 3443 KESSAHGSSSKTSVDSQKKTDGSVTFSKFAEKHRRLLNSFIRQNPSLLEKSLSMMLKAPR 3502
Query: 533 LV 538
L+
Sbjct: 3503 LI 3504
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = -2
Query: 252 CPRVGDWAVS-PRASGG-GPAVQRRASRPSVYTRPRGPTRQYTTRTEMYSR 106
C RVG WA P A GG G V +SR S Y G +Y R R
Sbjct: 131 CGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRDRYVDR 181
>At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|Q27294 RNA-binding protein cabeza {Drosophila
melanogaster}; contains Pfam profiles: PF00076 RNA
recognition motif (aka RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 372
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +3
Query: 3 ERERERDRGYLSDHNTRDRVRDRDQG 80
ERER ++R Y DH DR RDRD G
Sbjct: 341 ERERGKERDYDYDH---DRDRDRDYG 363
>At1g11810.1 68414.m01357 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain; EST gb|AA605362 comes
from this gene
Length = 377
Score = 28.7 bits (61), Expect = 3.6
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Frame = +3
Query: 216 PWDSLPSLRH-----EGSSTTPAIG--ATERTASNKGVCLIGKTVCAPNTQVTG 356
P SL SLR E SS T +G AT R +S+ G LIG +C+ + G
Sbjct: 21 PITSLRSLRSTCKKWEASSKTNLVGGKATARKSSHVGFILIGDKICSMKLDLNG 74
>At2g26430.1 68415.m03171 ania-6a type cyclin (RCY1) nearly
identical to ania-6a type cyclin [Arabidopsis thaliana]
GI:13924511
Length = 416
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = +3
Query: 3 ERERERDRGYLSDHNTRDRVRDRDQGYLSDHQSSFVSTSRCASCIGESARAAWYRHSD 176
ER RERDRG DR DR++ L D +S S R G S ++ + D
Sbjct: 346 ERGRERDRGRSHRGRDSDRDSDRERDKLKD-RSHHRSRDRLKDSGGHSDKSRHHSSRD 402
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +3
Query: 3 ERERERDRGYLSDHNTRDRVRDRDQGY 83
ERERERDR RDRVRDR G+
Sbjct: 748 ERERERDRD-------RDRVRDRGDGH 767
>At3g11650.1 68416.m01428 harpin-induced family protein / HIN1
family protein / harpin-responsive family protein /
NDR1/HIN1-like protein 2 identical to NDR1/HIN1-Like
protein 2 (GP:9502174) [Arabidopsis thaliana]; similar
to hin1 GB:CAA68848 [Nicotiana tabacum]
Length = 240
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 582 CLPDCAGAVERCCGCTSLLAFVRRIIALS 496
C C G+ RCCGC L +IA++
Sbjct: 35 CCFSCLGSCLRCCGCCILSLICNILIAVA 63
>At5g66670.1 68418.m08404 hypothetical protein contains
Pfam:PF05055: Protein of unknown function (DUF677)
Length = 408
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +2
Query: 320 QDSVRSEYTSDRESSRYGIVQQASIDSTDSRICYLTSSEISDDDRMSLTTAVSDE 484
Q ++RS+Y+SD S + +S+ S DS + T+S IS + T +++ E
Sbjct: 31 QTNIRSQYSSDLSSYASACKKYSSLKSFDSLLHERTNSIISSLAAQAKTRSLNIE 85
>At5g58930.1 68418.m07382 expressed protein contains Pfam PF05340:
Protein of unknown function (DUF740)
Length = 521
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +3
Query: 42 HNTRDRVRDRDQGYLSDHQSSFVSTSRCASCIGE 143
H T R R R H SS +T CA+C+ E
Sbjct: 3 HQTHQRRRRRHSAVCHRHPSSKPTTGFCATCLRE 36
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +3
Query: 3 ERERERDRGYLSDHNTRDRVRDRD-QGYLSDHQSSFVSTSRCASCIGESARAAWYRHSD 176
+R+R RDR R R ++RD +G +H+ S R A GE Y D
Sbjct: 331 DRDRGRDRTSRDHDRDRSRKKERDYEGGEYEHEGGGRSRERDAEYRGEPEETRGYYEDD 389
>At2g30505.1 68415.m03716 Expressed protein
Length = 321
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -2
Query: 570 CA-GAVERCCGCTSLLAFVRRIIALSPGSSSSDT 472
CA G +CC CT + V II L G S++ +
Sbjct: 128 CASGCFRKCCACTCMFVSVVLIIVLLVGLSANSS 161
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 237 DWAVSPRASGGGPAVQRRASRPSVYTRPRGPTRQY 133
DWA S SGG + +R+ SR R R P R+Y
Sbjct: 169 DWAFSSGPSGG-ESYRRKNSRYGRSQRSRSPRRRY 202
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,873,979
Number of Sequences: 28952
Number of extensions: 280865
Number of successful extensions: 925
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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