Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0460
         (597 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6SQG2 Cluster: Putative uncharacterized protein; n=2; ...    35   1.3  
UniRef50_Q5LMP8 Cluster: Conserved domain protein; n=1; Siliciba...    34   2.2  
UniRef50_Q15SV9 Cluster: Putative uncharacterized protein; n=1; ...    34   2.2  
UniRef50_Q92826 Cluster: Homeobox protein Hox-B13; n=27; Euteleo...    34   2.9  
UniRef50_UPI0000D65DF7 Cluster: PREDICTED: hypothetical protein;...    33   3.9  
UniRef50_O76648 Cluster: Putative uncharacterized protein F25E5....    33   3.9  
UniRef50_A0NFH0 Cluster: ENSANGP00000031039; n=1; Anopheles gamb...    33   3.9  
UniRef50_Q55SL8 Cluster: Putative uncharacterized protein; n=2; ...    33   3.9  
UniRef50_A3V5M6 Cluster: Putative uncharacterized protein; n=1; ...    33   5.1  
UniRef50_Q7AKQ7 Cluster: Putative LacI family regulator; n=3; St...    33   6.7  
UniRef50_Q2K8K5 Cluster: Probable transcriptional regulator prot...    33   6.7  
UniRef50_Q4E494 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  
UniRef50_Q67QI1 Cluster: Putative uncharacterized protein; n=1; ...    32   8.9  
UniRef50_Q1DDZ1 Cluster: Putative serine/threonine protein kinas...    32   8.9  

>UniRef50_A6SQG2 Cluster: Putative uncharacterized protein; n=2;
           Sclerotiniaceae|Rep: Putative uncharacterized protein -
           Botryotinia fuckeliana B05.10
          Length = 288

 Score = 35.1 bits (77), Expect = 1.3
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 380 RPFVRANRGRHFVRKARWRTRPQIL-IIVRYF 288
           RPF R N    F+ ++RWR R Q++ ++ RYF
Sbjct: 237 RPFPRVNDNNDFIDRSRWRNRCQLMNVLFRYF 268


>UniRef50_Q5LMP8 Cluster: Conserved domain protein; n=1;
           Silicibacter pomeroyi|Rep: Conserved domain protein -
           Silicibacter pomeroyi
          Length = 384

 Score = 34.3 bits (75), Expect = 2.2
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 457 LKLIGRRSVIYSPPLTFHTLAPALLPAHSFAP 362
           ++ IG R V  +  L  H +AP ++PAHSFAP
Sbjct: 196 IRWIGTRRVGLATQLLSHGVAPVVIPAHSFAP 227


>UniRef50_Q15SV9 Cluster: Putative uncharacterized protein; n=1;
           Pseudoalteromonas atlantica T6c|Rep: Putative
           uncharacterized protein - Pseudoalteromonas atlantica
           (strain T6c / BAA-1087)
          Length = 348

 Score = 34.3 bits (75), Expect = 2.2
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -2

Query: 479 LKRQTKNTKTDRET---KRYLQPTPHLPYTGTGIAARPFV 369
           LK+   + KT+ +    K+YL+P PHL   G G+ ARP V
Sbjct: 164 LKKADTDRKTETQQGVFKQYLKPAPHLAVFGGGVDARPVV 203


>UniRef50_Q92826 Cluster: Homeobox protein Hox-B13; n=27;
           Euteleostomi|Rep: Homeobox protein Hox-B13 - Homo
           sapiens (Human)
          Length = 284

 Score = 33.9 bits (74), Expect = 2.9
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -3

Query: 445 GRRSVIYSPPLTFHTLAPALLPAHSFAPIE 356
           G R+++   PLT H  AP L+PA ++AP++
Sbjct: 23  GGRNLVAHSPLTSHPAAPTLMPAVNYAPLD 52


>UniRef50_UPI0000D65DF7 Cluster: PREDICTED: hypothetical protein;
           n=1; Mus musculus|Rep: PREDICTED: hypothetical protein -
           Mus musculus
          Length = 117

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 17/52 (32%), Positives = 30/52 (57%)
 Frame = +3

Query: 228 HPPQCVALTSIASMHSYRAMEIPNDYQNLRSRSPSCFSNKMAASIGANEWAG 383
           HP  C+AL    S H Y+ + +P+  + + SRSP  ++N +A  +G+ +  G
Sbjct: 24  HPTLCLALNP--SSHIYQTLWVPSLPEGISSRSPLPWANGIAPPLGSAQPLG 73


>UniRef50_O76648 Cluster: Putative uncharacterized protein F25E5.9;
           n=1; Caenorhabditis elegans|Rep: Putative
           uncharacterized protein F25E5.9 - Caenorhabditis elegans
          Length = 119

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -2

Query: 509 HFSFTVSVILLKRQTKNTKTDRETKRYLQP 420
           H  F VSV+LLKR+T+  +T++ T   +QP
Sbjct: 76  HSFFLVSVVLLKRRTRRRRTEKSTITEMQP 105


>UniRef50_A0NFH0 Cluster: ENSANGP00000031039; n=1; Anopheles gambiae
           str. PEST|Rep: ENSANGP00000031039 - Anopheles gambiae
           str. PEST
          Length = 80

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +3

Query: 21  RTRDLYGLWCPISAYARFRSLFPFCYYKLFIYLLELQH 134
           RTR L  L  P SA+ +FR++F +C Y++F    E +H
Sbjct: 42  RTRMLINLCLPKSAWGKFRTMFRYC-YRVFQVNFECKH 78


>UniRef50_Q55SL8 Cluster: Putative uncharacterized protein; n=2;
           Filobasidiella neoformans|Rep: Putative uncharacterized
           protein - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 427

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 284 RPVAMHRRDACECDALWGMFCGVG 213
           +P+A H  + C+CD +   FCGVG
Sbjct: 236 QPIATHIAERCQCDVIVDAFCGVG 259


>UniRef50_A3V5M6 Cluster: Putative uncharacterized protein; n=1;
           Loktanella vestfoldensis SKA53|Rep: Putative
           uncharacterized protein - Loktanella vestfoldensis SKA53
          Length = 178

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 160 RPTAPIYVPNDDARSIRVPTPQNIP-HSASHSQASRLCIATGRWKYRT 300
           RP  P+Y P  D    R P P  +P H       +RL +   RW ++T
Sbjct: 8   RPFRPVYDPQTDHGPTRDPRPGEVPLHDIHLDPFARLTLVLCRWHFQT 55


>UniRef50_Q7AKQ7 Cluster: Putative LacI family regulator; n=3;
           Streptomyces|Rep: Putative LacI family regulator -
           Streptomyces coelicolor
          Length = 350

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = +1

Query: 196 ARSIRVPTPQNIPHSASHSQASRLCIATGRWKYRTIIKI*GRVRHLAFRTKWRPRLARTN 375
           AR    PT +++  +A  SQA+   +   +W+ R       RVR  A    +RP LA  N
Sbjct: 16  ARGSTRPTSRDVAQAAGVSQAAVSLVLGDKWRGRVSEPTAQRVRDAALELGYRPNLAARN 75

Query: 376 GR 381
            R
Sbjct: 76  LR 77


>UniRef50_Q2K8K5 Cluster: Probable transcriptional regulator
           protein, LysR family; n=3; Alphaproteobacteria|Rep:
           Probable transcriptional regulator protein, LysR family
           - Rhizobium etli (strain CFN 42 / ATCC 51251)
          Length = 316

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +1

Query: 214 PTPQNIPHSASHSQASRLCIATGRWKYRTIIKI*GRVRHLAFRTKWRPRLARTNGRAAMP 393
           P  + +P     + A  LCI   R   +   ++ GR+R L  +   + RL  T G AA P
Sbjct: 47  PLFERLPRGLRLTAAGELCIEHIREVLKNYERLEGRIRSLKMQQAGKVRLVTTVGLAAGP 106

Query: 394 VP 399
           +P
Sbjct: 107 LP 108


>UniRef50_Q4E494 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 243

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 300 DYQNLR-SRSPSCFSNKMAASIGANEWAGSNAGASVWKVRGG 422
           +Y+N R S S +CF      +  A +WAG    A+ W  RGG
Sbjct: 56  NYRNARLSMSGACFHIVDGRAHSAADWAGGRQSAARWSARGG 97


>UniRef50_Q67QI1 Cluster: Putative uncharacterized protein; n=1;
           Symbiobacterium thermophilum|Rep: Putative
           uncharacterized protein - Symbiobacterium thermophilum
          Length = 333

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +3

Query: 252 TSIASMHSYRAMEIPND--YQNLRSRSPSCFSNKMAASIGANEWAGSNAGASVWKVRG 419
           T++   H     E+P D   + +R+R P    N+  A+  A + AGS A + VW+VRG
Sbjct: 254 TTVMWSHLRGTAEVPEDAAVRIVRARYPESRENQWVATYLA-DGAGSGADSPVWEVRG 310


>UniRef50_Q1DDZ1 Cluster: Putative serine/threonine protein kinase;
           n=1; Myxococcus xanthus DK 1622|Rep: Putative
           serine/threonine protein kinase - Myxococcus xanthus
           (strain DK 1622)
          Length = 580

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 26/69 (37%), Positives = 36/69 (52%)
 Frame = -3

Query: 526 LVYSIITSRLPFR*SY*NAKLKTLKLIGRRSVIYSPPLTFHTLAPALLPAHSFAPIEAAI 347
           LVY ++  RLPFR    N  L   +LI R  ++Y PP     L P  LP H  A +E ++
Sbjct: 218 LVYEMLARRLPFR---DNGNLP--ELIYR--IVYDPPEPLEALVPD-LPDHVIAAVEKSL 269

Query: 346 LFEKQDGER 320
             EK+  +R
Sbjct: 270 --EKRPEDR 276


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 604,640,590
Number of Sequences: 1657284
Number of extensions: 12314118
Number of successful extensions: 36678
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 35239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36653
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)