Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0460
(597 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 28 0.90
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 27 2.1
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 27 2.7
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 26 4.8
SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein ... 25 6.3
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 8.4
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 8.4
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 8.4
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 8.4
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 8.4
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 8.4
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 8.4
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 8.4
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 8.4
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 25 8.4
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 8.4
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 8.4
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 28.3 bits (60), Expect = 0.90
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 414 SPSIHWHRHCCPPIRSRQSRPPFCSKSKMANATSDFDN 301
SPS W+++ PP+ + SR ++S + S FD+
Sbjct: 389 SPSTDWNQYVIPPLATPSSRNSKSTQSAVPENVSRFDS 426
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = +1
Query: 133 IHPETRWNVRPTAPIYVPNDDARSIRVPTPQN-IPHSASHSQASRLCIATG 282
+H + VR IY PND P N HS S S + ATG
Sbjct: 61 LHTNPKIEVRSETHIYEPNDSLFKENQDFPSNPTAHSPSSSSNDSVITATG 111
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 219 SAKHPPQCVALTSIASMHSYRAMEIPNDYQNLRSRSP 329
S K PP ++ + IAS S ++ P+ Y L SRSP
Sbjct: 205 SLKSPPVSISPSFIASAASTSSVSAPSQYPGL-SRSP 240
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 178 YVPNDDARSIRVPTPQNIPHSASHSQASR 264
+V N A S PTPQ++ ASH + R
Sbjct: 197 FVTNPHADSQECPTPQSLLMRASHHMSER 225
>SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein
Uhp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +3
Query: 237 QCVALTSIASMHSYRAMEIPNDYQNLRSRSPSCFSNKMAASIGANEWAGSNAGASV 404
+ ALT++ S + + +P Y+N S + S +S GA +AG++ +V
Sbjct: 125 ESTALTAMTSFVHHGMIFVPLGYKNTFSLMANVESIHGGSSWGAGSYAGADGSRNV 180
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 302 LSKSEVAFAILLFEQNGGLDWRE 370
L + E FA +F +NG L W+E
Sbjct: 87 LEELEQQFAERMFSENGSLTWQE 109
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 302 LSKSEVAFAILLFEQNGGLDWRE 370
L + E FA +F +NG L W+E
Sbjct: 87 LEELEQQFAERMFSENGSLTWQE 109
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 302 LSKSEVAFAILLFEQNGGLDWRE 370
L + E FA +F +NG L W+E
Sbjct: 87 LEELEQQFAERMFSENGSLTWQE 109
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 302 LSKSEVAFAILLFEQNGGLDWRE 370
L + E FA +F +NG L W+E
Sbjct: 87 LEELEQQFAERMFSENGSLTWQE 109
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 302 LSKSEVAFAILLFEQNGGLDWRE 370
L + E FA +F +NG L W+E
Sbjct: 87 LEELEQQFAERMFSENGSLTWQE 109
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 302 LSKSEVAFAILLFEQNGGLDWRE 370
L + E FA +F +NG L W+E
Sbjct: 87 LEELEQQFAERMFSENGSLTWQE 109
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 302 LSKSEVAFAILLFEQNGGLDWRE 370
L + E FA +F +NG L W+E
Sbjct: 87 LEELEQQFAERMFSENGSLTWQE 109
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 302 LSKSEVAFAILLFEQNGGLDWRE 370
L + E FA +F +NG L W+E
Sbjct: 87 LEELEQQFAERMFSENGSLTWQE 109
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 302 LSKSEVAFAILLFEQNGGLDWRE 370
L + E FA +F +NG L W+E
Sbjct: 87 LEELEQQFAERMFSENGSLTWQE 109
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +2
Query: 128 TTYIRKRDGTYARPRRYTCQTTTQDRSVCPLRKTSPTVRRTHKHRVY 268
+TY TY+R R Y+ T + +S R S T H+ Y
Sbjct: 628 STYSSSYSSTYSRGRSYSRSTRSYSKSRSYSRSRSVTPINNINHKKY 674
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 302 LSKSEVAFAILLFEQNGGLDWRE 370
L + E FA +F +NG L W+E
Sbjct: 87 LEELEQQFAERMFSENGSLTWQE 109
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 302 LSKSEVAFAILLFEQNGGLDWRE 370
L + E FA +F +NG L W+E
Sbjct: 87 LEELEQQFAERMFSENGSLTWQE 109
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,354
Number of Sequences: 5004
Number of extensions: 49581
Number of successful extensions: 139
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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