Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0460
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126...    29   2.1  
01_05_0011 + 17133501-17133738,17135335-17135607,17145224-171453...    29   2.1  
12_01_0874 + 8384332-8384657,8385447-8386044                           28   4.9  
07_03_0667 + 20517700-20517981                                         28   6.5  
05_04_0202 - 19010953-19013355                                         28   6.5  
10_08_0693 - 19926103-19926585                                         27   8.6  
07_03_1102 - 23981362-23982219                                         27   8.6  
04_03_0212 + 12697854-12698549,12698655-12698930,12698991-126990...    27   8.6  

>10_06_0053 -
           10110617-10111271,10112023-10112417,10112565-10112650,
           10112973-10113021,10114164-10114290,10114372-10114526,
           10114730-10114948
          Length = 561

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 271 IATGRWKYRTIIKI*GRVRHLAFRTKWRPRLARTNG 378
           +A G++++ TIIKI         R  W PRL + NG
Sbjct: 341 LALGKYQFFTIIKIEDVFTGTLVRHPWLPRLVKENG 376


>01_05_0011 +
           17133501-17133738,17135335-17135607,17145224-17145348,
           17145463-17145612,17145653-17145696,17145822-17146174,
           17146280-17146602,17147010-17147105
          Length = 533

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 420 HPSPSIHWHRHCCPPIRSRQSRPPF 346
           HP+   H  R C P +++RQ RPPF
Sbjct: 470 HPNED-HTLRFCSPQLQARQCRPPF 493


>12_01_0874 + 8384332-8384657,8385447-8386044
          Length = 307

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -2

Query: 410 LPYTGTGIAARPFVRANRGRHFVRKARWRTRPQILIIVRYFHRPVAM 270
           L   G G      +R   GRH  R +RWR RP    I+R   +PV +
Sbjct: 142 LAAAGCGSGGERLLRDEDGRHGGRASRWR-RPIFFPILRRRPQPVVV 187


>07_03_0667 + 20517700-20517981
          Length = 93

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 281 GDGNTERLSKSEVAFAILLFEQNGGLDWRERMGGQQCRCQCMEGE 415
           G G  E L+ + V  A+   + +GG    +R GG++  C C  G+
Sbjct: 12  GGGQGEELAVAPVVQAVAGGDADGGRAKGKRRGGERELCTCRNGK 56


>05_04_0202 - 19010953-19013355
          Length = 800

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -3

Query: 475 NAKLKTLKLIGRRSVIYSPPLTFHTLAPALLPAHSFAPI 359
           +AK++  + +G  +++  P   FH +     P H F+P+
Sbjct: 317 SAKVEHFRSLGVNAILLEPVFPFHQVKGPYFPYHFFSPM 355


>10_08_0693 - 19926103-19926585
          Length = 160

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 362 WRERMGGQQCRCQCMEGEGWAVNNASSPYQF*CF*FGVLVRSPKR*TRSDYRIHE 526
           WR   G    R   + G GW++        F CF F V+ RS +    + YR H+
Sbjct: 64  WRAAKGDPATRTLFIHGLGWSIEVDDLHSVFFCFGF-VIFRSHRSTFHALYRPHD 117


>07_03_1102 - 23981362-23982219
          Length = 285

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -1

Query: 435 ALFTAHPSPSIHWHRHCCPPIRSRQSRPP 349
           +LF AHPSPS        PP RS  S PP
Sbjct: 139 SLFYAHPSPSPQLRTR--PPRRSTGSAPP 165


>04_03_0212 +
           12697854-12698549,12698655-12698930,12698991-12699038,
           12699659-12699715,12700965-12701163,12702267-12702373,
           12702586-12702759,12702844-12703083,12703638-12703693,
           12704499-12704622
          Length = 658

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 348 MAASIGANEWAGSNAGASVWKVRGG 422
           +A +IG +   G   GASVW+VRGG
Sbjct: 113 LAEAIGGS---GGREGASVWEVRGG 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,805,835
Number of Sequences: 37544
Number of extensions: 364143
Number of successful extensions: 1245
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)