Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0460
         (597 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51496| Best HMM Match : N2227 (HMM E-Value=5.3e-14)                 29   2.9  
SB_40761| Best HMM Match : UPF0020 (HMM E-Value=9.5e-06)               29   3.8  
SB_28164| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_48629| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_24271| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_51496| Best HMM Match : N2227 (HMM E-Value=5.3e-14)
          Length = 248

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 157 VRPTAPIYVPNDDARSIRVP--TPQNIPHSASHSQAS 261
           V  T  +  PND  R I++P   PQ++P S + S A+
Sbjct: 145 VHQTCNVRSPNDQIRPIKIPDTDPQDLPPSTNFSMAA 181


>SB_40761| Best HMM Match : UPF0020 (HMM E-Value=9.5e-06)
          Length = 1176

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 278  VAMHRRDACECDALWGMFCGVG 213
            +A H  + C CD +   FCGVG
Sbjct: 1006 IAEHIAERCRCDLIVDAFCGVG 1027


>SB_28164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -1

Query: 438 EALFTAHPSPSIHWHRHCCPPIRSRQSRPPFCSKSKMAN 322
           +++F ++P+P++ W RH     R+R+    F S ++  N
Sbjct: 80  DSMFKSNPNPNVSWSRHVQDFPRAREGTREFASWTQHHN 118


>SB_48629| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
 Frame = +1

Query: 130 NIHPETRWN-VRPTAPIYVPNDDA---RSIRVPTPQNIPHSASHSQASRLCI 273
           N  P++ +N + P  P   P   A     + VPT Q    S +H Q  R CI
Sbjct: 48  NAFPQSSYNHISPPHPYSSPEPRAPPHNILEVPTKQEYVPSVTHHQTPRACI 99


>SB_24271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 422 PTPHLPYTGTGIAARPFVRANRGRHFV 342
           P+P   YTG   A  P+V++N  +HF+
Sbjct: 60  PSPPAEYTGFQKAFTPYVQSNYPQHFI 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,309,516
Number of Sequences: 59808
Number of extensions: 421588
Number of successful extensions: 1327
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)