Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0460
         (597 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81599-1|AAB39863.1|  284|Homo sapiens homeodomain protein HOXB1...    34   0.44 
U57052-1|AAC50664.1|  284|Homo sapiens Hoxb-13 protein.                34   0.44 
BT007410-1|AAP36078.1|  284|Homo sapiens homeo box B13 protein.        34   0.44 
BC070233-1|AAH70233.1|  284|Homo sapiens HOXB13 protein protein.       34   0.44 
BC007092-1|AAH07092.1|  284|Homo sapiens homeobox B13 protein.         34   0.44 
AY937237-1|AAY17396.1|  284|Homo sapiens PSGD protein protein.         34   0.44 
BC108907-1|AAI08908.2|  917|Homo sapiens TJP3 protein protein.         29   9.5  
BC108906-1|AAI08907.1|  938|Homo sapiens TJP3 protein protein.         29   9.5  
AK027292-1|BAB55020.1|  548|Homo sapiens protein ( Homo sapiens ...    29   9.5  
AC005954-1|AAC72274.1|  952|Homo sapiens ZO-3 [Homo sapiens] pro...    29   9.5  

>U81599-1|AAB39863.1|  284|Homo sapiens homeodomain protein HOXB13
           protein.
          Length = 284

 Score = 33.9 bits (74), Expect = 0.44
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -3

Query: 445 GRRSVIYSPPLTFHTLAPALLPAHSFAPIE 356
           G R+++   PLT H  AP L+PA ++AP++
Sbjct: 23  GGRNLVAHSPLTSHPAAPTLMPAVNYAPLD 52


>U57052-1|AAC50664.1|  284|Homo sapiens Hoxb-13 protein.
          Length = 284

 Score = 33.9 bits (74), Expect = 0.44
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -3

Query: 445 GRRSVIYSPPLTFHTLAPALLPAHSFAPIE 356
           G R+++   PLT H  AP L+PA ++AP++
Sbjct: 23  GGRNLVAHSPLTSHPAAPTLMPAVNYAPLD 52


>BT007410-1|AAP36078.1|  284|Homo sapiens homeo box B13 protein.
          Length = 284

 Score = 33.9 bits (74), Expect = 0.44
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -3

Query: 445 GRRSVIYSPPLTFHTLAPALLPAHSFAPIE 356
           G R+++   PLT H  AP L+PA ++AP++
Sbjct: 23  GGRNLVAHSPLTSHPAAPTLMPAVNYAPLD 52


>BC070233-1|AAH70233.1|  284|Homo sapiens HOXB13 protein protein.
          Length = 284

 Score = 33.9 bits (74), Expect = 0.44
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -3

Query: 445 GRRSVIYSPPLTFHTLAPALLPAHSFAPIE 356
           G R+++   PLT H  AP L+PA ++AP++
Sbjct: 23  GGRNLVAHSPLTSHPAAPTLMPAVNYAPLD 52


>BC007092-1|AAH07092.1|  284|Homo sapiens homeobox B13 protein.
          Length = 284

 Score = 33.9 bits (74), Expect = 0.44
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -3

Query: 445 GRRSVIYSPPLTFHTLAPALLPAHSFAPIE 356
           G R+++   PLT H  AP L+PA ++AP++
Sbjct: 23  GGRNLVAHSPLTSHPAAPTLMPAVNYAPLD 52


>AY937237-1|AAY17396.1|  284|Homo sapiens PSGD protein protein.
          Length = 284

 Score = 33.9 bits (74), Expect = 0.44
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -3

Query: 445 GRRSVIYSPPLTFHTLAPALLPAHSFAPIE 356
           G R+++   PLT H  AP L+PA ++AP++
Sbjct: 23  GGRNLVAHSPLTSHPAAPTLMPAVNYAPLD 52


>BC108907-1|AAI08908.2|  917|Homo sapiens TJP3 protein protein.
          Length = 917

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 291 IPNDYQNLRSRSPSCFSNKMAASIGANEWAGSNAGASVWKVRG 419
           IPN  Q+   +  S  + + A  +G    AGSNA A  W++RG
Sbjct: 539 IPN--QSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRG 579


>BC108906-1|AAI08907.1|  938|Homo sapiens TJP3 protein protein.
          Length = 938

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 291 IPNDYQNLRSRSPSCFSNKMAASIGANEWAGSNAGASVWKVRG 419
           IPN  Q+   +  S  + + A  +G    AGSNA A  W++RG
Sbjct: 558 IPN--QSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRG 598


>AK027292-1|BAB55020.1|  548|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14386 fis, clone HEMBA1002417, moderately
           similar to TIGHT JUNCTION PROTEIN ZO-1. ).
          Length = 548

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 291 IPNDYQNLRSRSPSCFSNKMAASIGANEWAGSNAGASVWKVRG 419
           IPN  Q+   +  S  + + A  +G    AGSNA A  W++RG
Sbjct: 168 IPN--QSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRG 208


>AC005954-1|AAC72274.1|  952|Homo sapiens ZO-3 [Homo sapiens]
           protein.
          Length = 952

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 291 IPNDYQNLRSRSPSCFSNKMAASIGANEWAGSNAGASVWKVRG 419
           IPN  Q+   +  S  + + A  +G    AGSNA A  W++RG
Sbjct: 572 IPN--QSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRG 612


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,234,062
Number of Sequences: 237096
Number of extensions: 1806794
Number of successful extensions: 4574
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4572
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)