Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0460
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078157-3|AAG24079.1|  119|Caenorhabditis elegans Hypothetical ...    33   0.12 
Z48621-12|CAA88545.2|  425|Caenorhabditis elegans Hypothetical p...    30   1.1  
U82935-1|AAB40868.1|  680|Caenorhabditis elegans protein kinase ...    30   1.4  
U29376-3|AAM51503.1|  680|Caenorhabditis elegans Protein kinase ...    30   1.4  
Z81131-4|CAD01083.1|  415|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    28   4.4  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    28   4.4  

>AF078157-3|AAG24079.1|  119|Caenorhabditis elegans Hypothetical
           protein F25E5.9 protein.
          Length = 119

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -2

Query: 509 HFSFTVSVILLKRQTKNTKTDRETKRYLQP 420
           H  F VSV+LLKR+T+  +T++ T   +QP
Sbjct: 76  HSFFLVSVVLLKRRTRRRRTEKSTITEMQP 105


>Z48621-12|CAA88545.2|  425|Caenorhabditis elegans Hypothetical
           protein R07B1.8 protein.
          Length = 425

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -2

Query: 545 CHVQKHSRVFDNHFSFTVSVILLKRQTKNTKTDRETKRYLQPTPHLPY 402
           CH ++  ++FD  F  +VS   +    ++T  D ET++  QP P + Y
Sbjct: 57  CHTER--KIFDECFDASVSATHISPPQESTSNDGETRKVTQP-PMVKY 101


>U82935-1|AAB40868.1|  680|Caenorhabditis elegans protein kinase C2
           A isoform protein.
          Length = 680

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 375 IRSRQSRPPFCSKSKMANATSDFDNRSVFPSP 280
           I +RQ +PPF  K K A+ TS+FD+      P
Sbjct: 617 IETRQIQPPFKPKLKSADDTSNFDSEFTHEVP 648


>U29376-3|AAM51503.1|  680|Caenorhabditis elegans Protein kinase c
           protein 2, isoforma protein.
          Length = 680

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 375 IRSRQSRPPFCSKSKMANATSDFDNRSVFPSP 280
           I +RQ +PPF  K K A+ TS+FD+      P
Sbjct: 617 IETRQIQPPFKPKLKSADDTSNFDSEFTHEVP 648


>Z81131-4|CAD01083.1|  415|Caenorhabditis elegans Hypothetical
           protein T24D1.5 protein.
          Length = 415

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
 Frame = -1

Query: 405 IHWHRHC----CPPIRSRQSRPPFCSKSKMANATSDFDNR 298
           +HWH H     CP  R R SR P  S   + +  S   +R
Sbjct: 374 VHWHHHALSPSCPLCRRRWSRQPDVSNMNVISQRSTIAHR 413


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 435   ALFTAHPSPSIHWHRH 388
             A FT HP+P IHW ++
Sbjct: 15620 AEFTGHPAPEIHWFKN 15635


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 435   ALFTAHPSPSIHWHRH 388
             A FT HP+P IHW ++
Sbjct: 15620 AEFTGHPAPEIHWFKN 15635


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,803,237
Number of Sequences: 27780
Number of extensions: 289272
Number of successful extensions: 896
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)