Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0460
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    25   0.56 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   0.98 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   3.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.0  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   9.2  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 390 HCCPPIRSRQSRPPFCSKSKMANATS 313
           HC P +   QS P F ++ + +N++S
Sbjct: 350 HCKPELGQSQSSPKFVARREESNSSS 375


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -1

Query: 411 PSIHWHRHCCPPIRSRQSR-PPFCSKSKMANATSDFDNRSVFPSPCS 274
           P  H H H    ++    R PP  S+S  +   S + + + F +PC+
Sbjct: 349 PPHHHHHHQTQSLQHLHYRQPPTLSESYSSYVNSMYASGAQFATPCT 395


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +3

Query: 510 IIEYTRMFLDVTTSYNSMEPGCAHE 584
           + + T+    + + Y++ EP C HE
Sbjct: 315 VFQSTQYIRHIKSPYHTPEPDCIHE 339


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 160 RPTAPIYVPNDDARSIRVPTPQNIP 234
           RP+ P+YVP  D +      P  +P
Sbjct: 14  RPSEPVYVPKGDNKVAFDIPPDYLP 38


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 248 CDALWGMFCGV 216
           CD LWG+  GV
Sbjct: 120 CDRLWGVDTGV 130


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 245  DALWGMFCGVGTRIDL 198
            D  +G  CG G RID+
Sbjct: 1272 DIRYGKNCGKGERIDM 1287


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 375 IRSRQSRPPFCSKSKMANATSDFD 304
           +R+R   PP   + + A  T++FD
Sbjct: 634 LRARTLEPPIMPRVQNATDTTNFD 657


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,037
Number of Sequences: 438
Number of extensions: 3747
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)