Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0460
         (597 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ...    29   2.4  
At2g27120.1 68415.m03259 DNA-directed DNA polymerase epsilon cat...    29   2.4  
At5g46160.2 68418.m05678 ribosomal protein L14 family protein / ...    29   3.1  
At5g46160.1 68418.m05677 ribosomal protein L14 family protein / ...    29   3.1  
At4g19940.1 68417.m02921 F-box family protein contains Pfam PF00...    28   4.1  
At4g33290.1 68417.m04736 F-box family protein contains Pfam PF00...    27   7.2  
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d...    27   7.2  
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ...    27   9.5  
At3g04160.1 68416.m00440 expressed protein ; expression supporte...    27   9.5  
At1g21695.1 68414.m02716 hydroxyproline-rich glycoprotein family...    27   9.5  

>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
           protein 
          Length = 809

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/50 (38%), Positives = 21/50 (42%)
 Frame = -1

Query: 423 AHPSPSIHWHRHCCPPIRSRQSRPPFCSKSKMANATSDFDNRSVFPSPCS 274
           A P P     R   PP RS   RPP     K A+   D+D R   P P S
Sbjct: 558 ARPMPPPARARPLPPPARSYDRRPPVPLYPK-ASLKRDYDRRDELPPPRS 606


>At2g27120.1 68415.m03259 DNA-directed DNA polymerase epsilon
            catalytic subunit, putative similar to SP|Q07864 DNA
            polymerase epsilon, catalytic subunit A (EC 2.7.7.7) (DNA
            polymerase II subunit A) {Homo sapiens}; contains Pfam
            profiles: PF03175 DNA polymerase type B, organellar and
            viral, PF00136 DNA polymerase family B, PF03104 DNA
            polymerase family B, exonuclease domain
          Length = 2138

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 45   WCPISAYARFRSLFPFCYYK 104
            WC IS+Y   RS+  + YYK
Sbjct: 1076 WCKISSYTGIRSIIDWMYYK 1095


>At5g46160.2 68418.m05678 ribosomal protein L14 family protein /
           huellenlos paralog (HLP) contains Pfam profile PF00238:
           Ribosomal protein L14p/L23e; identical to cDNA
           HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
           product GU:18140859
          Length = 172

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = -2

Query: 578 RAAGLHRIIRRCHVQKHSRVFDNHFSFTVS-VILLKRQTKNTKTDRET--KRYLQPTPH 411
           + A ++ ++ R  +Q+  RV  +   F  + V+L+  + KNTKTDR+    R   P PH
Sbjct: 97  KGAVVYGVVVRAAMQR-GRVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPH 154


>At5g46160.1 68418.m05677 ribosomal protein L14 family protein /
           huellenlos paralog (HLP) contains Pfam profile PF00238:
           Ribosomal protein L14p/L23e; identical to cDNA
           HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
           product GU:18140859
          Length = 173

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = -2

Query: 578 RAAGLHRIIRRCHVQKHSRVFDNHFSFTVS-VILLKRQTKNTKTDRET--KRYLQPTPH 411
           + A ++ ++ R  +Q+  RV  +   F  + V+L+  + KNTKTDR+    R   P PH
Sbjct: 98  KGAVVYGVVVRAAMQR-GRVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPH 155


>At4g19940.1 68417.m02921 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain;similar to F-box protein Fbx8
           (GI:6164735) [Homo
           sapiens]|8737673|gb|AV566223.1|AV566223
          Length = 411

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 506 FSFTVSVILLKRQTKNTKTDRETKRYLQPTPHLPY 402
           FSF ++VIL + + +  +  R+  +  QP P +P+
Sbjct: 3   FSFDLAVILQRERRRTKRRRRDLCKSRQPIPEIPF 37


>At4g33290.1 68417.m04736 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 430

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = -1

Query: 207 DRSCVVVWHVYRRGRAYVPSRF--RMYVVALINI*IAY-SNKKGR 82
           D + +VVW+ YR+   ++  R+  R YV+  I   + Y +NK GR
Sbjct: 113 DDTRIVVWNPYRQETRWIIPRYSHRPYVMNNIRYALGYENNKSGR 157


>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
           domain-containing protein similar to eukaryotic protein
           synthesis initiation factor [Homo sapiens] GI:3941724;
           contains Pfam profiles PF02854: MIF4G domain, PF02847:
           MA3 domain
          Length = 1544

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 157 VRPTAPIYVPNDDARSIRVPTPQNIPHSA 243
           +RP AP ++ +D   S++    QN+  SA
Sbjct: 301 IRPAAPAHLSSDSTSSVKARNAQNVMSSA 329


>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
            transcription factor jumonji (jmj) family protein
            contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
            domain and PF00096: Zinc finger, C2H2 type
          Length = 1327

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -1

Query: 420  HPSPSIHWHRHCCPPIRSRQSRPPFCSKSKMANATSDFDNRSV 292
            +P  SI + R  C  +RSR  R   C  S     TSD + + +
Sbjct: 1147 NPESSIGFIRSPCEGLRSRGKRKATCETSLKHTETSDEEKKPI 1189


>At3g04160.1 68416.m00440 expressed protein ; expression supported
           by MPSS
          Length = 712

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
 Frame = +3

Query: 216 HSAKHPPQCVALTSIASMHSYR-AMEIPNDYQNLRSRSPSCFSNKMAASIGANEWAGSNA 392
           HS + P     +  + S  SYR  +E+P + Q        C S    A  G+N +     
Sbjct: 117 HSLRCPNTLDLIHLLESFSSYRNTLELPCELQLNNGDGDLCISLDDLADFGSNFFYRDCP 176

Query: 393 GASVWKVRGGL*ITLRLPISFSV 461
           GA  +    G   TL LP   SV
Sbjct: 177 GAVKFSELDGKKRTLTLPHVLSV 199


>At1g21695.1 68414.m02716 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 217

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 148 RWNVRPTAPIYVPNDDARSIRVPTPQN 228
           +W +RP  P   P DD  ++  P P N
Sbjct: 17  KWEIRPGVPKTRPGDDDPALLQPPPPN 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,007,866
Number of Sequences: 28952
Number of extensions: 273799
Number of successful extensions: 752
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)