Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0458
         (336 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q98PR9 Cluster: Putative uncharacterized protein MYPU_6...    33   1.7  
UniRef50_UPI00006CAA4D Cluster: TPR Domain containing protein; n...    31   3.8  
UniRef50_A7F1R1 Cluster: Putative uncharacterized protein; n=1; ...    31   3.8  
UniRef50_A6S6Y3 Cluster: Putative uncharacterized protein; n=1; ...    31   3.8  
UniRef50_Q9VZ10 Cluster: CG34143-PA, isoform A; n=6; Sophophora|...    31   5.1  
UniRef50_Q2KC65 Cluster: Probable glycosyltransferase protein; n...    31   6.7  
UniRef50_Q1JT58 Cluster: 50s ribosomal protein l27, putative pre...    31   6.7  
UniRef50_Q17656 Cluster: Putative uncharacterized protein; n=1; ...    31   6.7  

>UniRef50_Q98PR9 Cluster: Putative uncharacterized protein
           MYPU_6500; n=1; Mycoplasma pulmonis|Rep: Putative
           uncharacterized protein MYPU_6500 - Mycoplasma pulmonis
          Length = 1222

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 319 NYYDNVYATKYYHIQVLSNAIRVRLREFRTRFQLNNKFTLIFNHFKK 179
           N Y+  Y   Y++    S  IRV  +  +T   +NNKF  + N FKK
Sbjct: 205 NKYNLTYEKIYFNDVTASAKIRVNAK-LKTNENINNKFEFVINGFKK 250


>UniRef50_UPI00006CAA4D Cluster: TPR Domain containing protein; n=1;
           Tetrahymena thermophila SB210|Rep: TPR Domain containing
           protein - Tetrahymena thermophila SB210
          Length = 1280

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 319 NYYDNVYATKYYHIQVLSNAIRVRLREFRTRFQLNNK 209
           N YD+V +T YY +Q    A+   L+E + R QLN K
Sbjct: 671 NSYDHVAST-YYDLQKYKEALEYYLQELKIRKQLNQK 706


>UniRef50_A7F1R1 Cluster: Putative uncharacterized protein; n=1;
           Sclerotinia sclerotiorum 1980|Rep: Putative
           uncharacterized protein - Sclerotinia sclerotiorum 1980
          Length = 285

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 195 LTILRNRKTIPVIGVSKPSVKTRPRYIGLPICPGETGKVSGPPVINN 55
           +T+L  R + P + +  PS  + P++  +PI P  T     PP++ N
Sbjct: 132 ITLLFQRPSQPGLEILPPSSSSEPKWTPVPIQPPPTESDPSPPILVN 178


>UniRef50_A6S6Y3 Cluster: Putative uncharacterized protein; n=1;
           Botryotinia fuckeliana B05.10|Rep: Putative
           uncharacterized protein - Botryotinia fuckeliana B05.10
          Length = 277

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 195 LTILRNRKTIPVIGVSKPSVKTRPRYIGLPICPGETGKVSGPPVINN 55
           +T+L  R + P + +  PS  + P++  +PI P  T     PP++ N
Sbjct: 130 ITLLFQRPSQPGLEILPPSSSSEPKWTPVPIQPPTTENDPSPPILVN 176


>UniRef50_Q9VZ10 Cluster: CG34143-PA, isoform A; n=6;
           Sophophora|Rep: CG34143-PA, isoform A - Drosophila
           melanogaster (Fruit fly)
          Length = 553

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +2

Query: 143 GLLTPITGIVFLFLKMVKNQCKFVV*LKSCPK--FPEPDANG 262
           GLLT +TG+ FL  +M++ +  F + L+   K  F E  ANG
Sbjct: 201 GLLTRVTGVDFLVAQMLRERLNFTMLLQQPEKKYFGERSANG 242


>UniRef50_Q2KC65 Cluster: Probable glycosyltransferase protein; n=1;
           Rhizobium etli CFN 42|Rep: Probable glycosyltransferase
           protein - Rhizobium etli (strain CFN 42 / ATCC 51251)
          Length = 394

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -3

Query: 271 LSNAIRVRLREFRTRFQLNNKFTLIFNHFKK*KDNSSYWR 152
           L  A + R RE   R+ L  KF  I NHF K KD+ + +R
Sbjct: 185 LEPASQDRHREVLQRYDLPQKFLYIANHFWKHKDHETAFR 224


>UniRef50_Q1JT58 Cluster: 50s ribosomal protein l27, putative
           precursor; n=1; Toxoplasma gondii RH|Rep: 50s ribosomal
           protein l27, putative precursor - Toxoplasma gondii RH
          Length = 229

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -2

Query: 233 DTISIKQQIYIDF*PF*EIERQFQLLA*VS-HQLRLDLAILVFPSVLVKLERSRGHQ 66
           D+++  +  Y+DF P  + E  F+    +  H+ R+    LV  SVL  +E SRGHQ
Sbjct: 84  DSLTAVRSGYVDFLPVYKFEYHFRKRRWLKRHRRRVHAGFLV--SVLDSMEESRGHQ 138


>UniRef50_Q17656 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 1225

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 30  ERLICFFYHY*SLVAPRPFQFHQDRWEDQYSEVES 134
           ER I   YH+  ++ P   + H  +W+  Y EVES
Sbjct: 183 ERAIVLLYHFPQIILPCIGKKHFKKWDQYYWEVES 217


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 328,481,247
Number of Sequences: 1657284
Number of extensions: 5957951
Number of successful extensions: 13131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13131
length of database: 575,637,011
effective HSP length: 87
effective length of database: 431,453,303
effective search space used: 10354879272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)