Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0458
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    28   0.33 
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    25   2.3  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   3.1  
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    25   3.1  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   4.1  
SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    24   5.4  
SPAC18G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   7.1  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    24   7.1  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     23   9.4  

>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 28.3 bits (60), Expect = 0.33
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 304 VYATKYYHIQVLSNAIRVRLREFRTRFQL 218
           V+ T YY+  +++  IRV  +++ TRFQ+
Sbjct: 177 VHVTMYYYYYLVAKGIRVPWKKWVTRFQI 205


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 53  SLLITGGPETFPVSPGQMGR 112
           +++ TG P + PV PG +GR
Sbjct: 121 AVIDTGSPISIPVGPGTLGR 140


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 109 KTNIARSSLN*WLTYANNWNCLSI 180
           ++N++   LN   T  NNW CLSI
Sbjct: 174 RSNLSNRQLN---TSENNWTCLSI 194


>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +2

Query: 128 RVLTDGLLTPITGIVFLFLKMVKNQCKFVV*LKS 229
           RV  D  +    GIVF FL M   +CK    LKS
Sbjct: 129 RVALDQFIFAPLGIVFFFLFMGITECKSYERLKS 162


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 304 VYATKYYHIQVLSNAIRVRLREFRTRFQLNNKF-TLIFNHF 185
           V  T Y  +  L N      +EF+ R Q+ + F  L+  HF
Sbjct: 446 VLRTSYLCVLSLQNVFASNSKEFKLRAQIESHFGRLMLEHF 486


>SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 182

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 2   HIQQYFMNTRKTNMFFLSL 58
           H+Q+ F  T+ TNM +  L
Sbjct: 107 HVQKLFQRTQSTNMIYTKL 125


>SPAC18G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 114

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 122 RGRVLTDGLLTPITGIVFLFLK 187
           R ++L +G   P+TGI+  +LK
Sbjct: 48  RLQILKEGFTVPMTGIISQYLK 69


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 124 RSSLN*WLTYANNWNCLSIS 183
           R ++  W T+ N +NCL I+
Sbjct: 327 RCNIKIWKTFINTFNCLPIA 346


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 60  NNDKKNILVFRVF 22
           NN+KKN  VFR+F
Sbjct: 212 NNNKKNSYVFRLF 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,394,250
Number of Sequences: 5004
Number of extensions: 25945
Number of successful extensions: 51
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)