Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0458
         (336 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0529 - 20067974-20068588,20069982-20070048,20070156-200702...    27   2.9  
11_01_0214 - 1682731-1682744,1683597-1683640,1684284-1684372,168...    27   5.0  
07_03_0023 + 12575213-12575800                                         27   5.0  
06_03_1468 - 30354724-30354945,30359326-30359497,30359587-303597...    26   8.7  

>12_02_0529 -
           20067974-20068588,20069982-20070048,20070156-20070264,
           20070357-20070402,20070501-20070636,20070745-20070866,
           20070944-20071306,20071914-20072043,20072129-20072202,
           20072620-20072709,20072836-20072875,20073047-20073117,
           20074248-20074277
          Length = 630

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 68  GGPETFPVSPGQMGRPI*RGRVLTDGLLTPITG 166
           GGP T     G  G+P  +GR +  GLL  + G
Sbjct: 543 GGPRTMTAGDGGGGQPGTQGRAVGGGLLILVVG 575


>11_01_0214 -
           1682731-1682744,1683597-1683640,1684284-1684372,
           1684461-1684505,1685044-1685073,1685189-1685296,
           1685380-1685465,1686180-1686267,1687494-1687694,
           1687885-1687960,1688040-1688089,1688180-1688242,
           1688322-1688398,1688893-1688953,1689377-1689417,
           1690005-1690086
          Length = 384

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 170 VFLFLKMVKNQCKFVV*LKSCPKFPEPDANGIAQDL 277
           V++ +++  N C F++   S P+     ANG+A  L
Sbjct: 316 VYMVVQVTINTCSFILQNNSVPQHQRATANGLATTL 351


>07_03_0023 + 12575213-12575800
          Length = 195

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 82  LSSFTRTDGKTNIARSSLN*WLTYANNWN 168
           L++ +RTDG T +  SS   WL     W+
Sbjct: 150 LATSSRTDGTTRMGESSRLEWLPLCQRWS 178


>06_03_1468 -
           30354724-30354945,30359326-30359497,30359587-30359770,
           30359865-30360111,30360817-30362052
          Length = 686

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 41  MFFLSLLITGGPETFPVSPGQMGRPI*RGRVLTDGLLTPITGIVFL 178
           +FFL     GGP      PG +G P+  GR  +     P TG+ F+
Sbjct: 190 LFFLFRRAQGGPGA---GPGGLGGPMDFGRSKSKFQEVPETGVTFV 232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,433,280
Number of Sequences: 37544
Number of extensions: 150957
Number of successful extensions: 296
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)