Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0458
         (336 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16293| Best HMM Match : LIM (HMM E-Value=9.5)                       32   0.10 
SB_43139| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.9  
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_26835| Best HMM Match : TGF_beta (HMM E-Value=7.3e-33)              27   3.8  
SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)               26   6.6  
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)                26   6.6  

>SB_16293| Best HMM Match : LIM (HMM E-Value=9.5)
          Length = 162

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = -1

Query: 189 ILRNRKTIPVIGVSKP--SVKTRPR 121
           + RN+ TIP IG+  P  SVKTRPR
Sbjct: 137 VFRNKNTIPNIGIQAPLRSVKTRPR 161


>SB_43139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 280 IQVLSNAIRVRLREFRTRFQLNNKFTLIFNHFKK*KDNSSYWRK 149
           I V S+  R  +R    RF+L  K    F  F+  +  SSYW++
Sbjct: 146 ISVGSSDFRKEVRVIGRRFELYTKEVRNFGRFEFLEGGSSYWKE 189


>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 192  TILRNRKTIPVIG-VSKPSVK-TRPRYIGLPICPGETGKVSGPPVINNDKKNI 40
            T   ++ T+ V G  +K  +  T+P  + L   P ET KV   P+I  D KN+
Sbjct: 2665 TTANHKVTVTVTGGTAKDGLDYTKPALVELTFAPDETSKVIKIPII--DDKNV 2715


>SB_26835| Best HMM Match : TGF_beta (HMM E-Value=7.3e-33)
          Length = 657

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 298 ATKYYHIQVLSNAIRVRLR 242
           AT+Y H+Q L NA  VRL+
Sbjct: 225 ATRYKHVQYLGNATSVRLQ 243


>SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)
          Length = 450

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 65  TGGPETFPVSPGQMGRPI*RGR 130
           +  P   P+SP Q  RP+ RGR
Sbjct: 337 SNSPRRVPLSPRQQSRPVVRGR 358


>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 65  TGGPETFPVSPGQMGRPI 118
           TGGP T PV P  +GR I
Sbjct: 141 TGGPITIPVGPETLGRII 158


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,939,975
Number of Sequences: 59808
Number of extensions: 184729
Number of successful extensions: 346
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)