Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0458
         (336 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y00706-1|CAA68698.1| 1212|Homo sapiens protein ( Human mRNA for ...    28   6.2  
X05561-1|CAA29075.1|  944|Homo sapiens protein ( Human mRNA for ...    28   6.2  
M26576-1|AAA53098.1| 1669|Homo sapiens alpha-1 type IV collagen ...    28   6.2  
BC151220-1|AAI51221.1| 1669|Homo sapiens COL4A1 protein protein.       28   6.2  
BC047305-1|AAH47305.1| 1075|Homo sapiens COL4A1 protein protein.       28   6.2  
AL390755-1|CAH74130.1| 1669|Homo sapiens collagen type IV alpha ...    28   6.2  
AL161773-1|CAH71365.1| 1669|Homo sapiens collagen type IV alpha ...    28   6.2  

>Y00706-1|CAA68698.1| 1212|Homo sapiens protein ( Human mRNA for
           alpha1 chain of basement membrane (type IV) collagen.in
           neoplastic tissue).  ).
          Length = 1212

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 156 GVSKPSVKTRPRYIGLPICPGETGKVSGPPV 64
           GV  P +K  P   G+P  PGE G +  P V
Sbjct: 690 GVGLPGLKGLPGLPGIPGTPGEKGSIGVPGV 720


>X05561-1|CAA29075.1|  944|Homo sapiens protein ( Human mRNA for
           alpha-1 chain of collagen IV N-terminus. ).
          Length = 944

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 156 GVSKPSVKTRPRYIGLPICPGETGKVSGPPV 64
           GV  P +K  P   G+P  PGE G +  P V
Sbjct: 735 GVGLPGLKGLPGLPGIPGTPGEKGSIGVPGV 765


>M26576-1|AAA53098.1| 1669|Homo sapiens alpha-1 type IV collagen
           protein.
          Length = 1669

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 156 GVSKPSVKTRPRYIGLPICPGETGKVSGPPV 64
           GV  P +K  P   G+P  PGE G +  P V
Sbjct: 735 GVGLPGLKGLPGLPGIPGTPGEKGSIGVPGV 765


>BC151220-1|AAI51221.1| 1669|Homo sapiens COL4A1 protein protein.
          Length = 1669

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 156 GVSKPSVKTRPRYIGLPICPGETGKVSGPPV 64
           GV  P +K  P   G+P  PGE G +  P V
Sbjct: 735 GVGLPGLKGLPGLPGIPGTPGEKGSIGVPGV 765


>BC047305-1|AAH47305.1| 1075|Homo sapiens COL4A1 protein protein.
          Length = 1075

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 156 GVSKPSVKTRPRYIGLPICPGETGKVSGPPV 64
           GV  P +K  P   G+P  PGE G +  P V
Sbjct: 141 GVGLPGLKGLPGLPGIPGTPGEKGSIGVPGV 171


>AL390755-1|CAH74130.1| 1669|Homo sapiens collagen type IV alpha 1
           protein.
          Length = 1669

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 156 GVSKPSVKTRPRYIGLPICPGETGKVSGPPV 64
           GV  P +K  P   G+P  PGE G +  P V
Sbjct: 735 GVGLPGLKGLPGLPGIPGTPGEKGSIGVPGV 765


>AL161773-1|CAH71365.1| 1669|Homo sapiens collagen type IV alpha 1
           protein.
          Length = 1669

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 156 GVSKPSVKTRPRYIGLPICPGETGKVSGPPV 64
           GV  P +K  P   G+P  PGE G +  P V
Sbjct: 735 GVGLPGLKGLPGLPGIPGTPGEKGSIGVPGV 765


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,420,578
Number of Sequences: 237096
Number of extensions: 1037514
Number of successful extensions: 1835
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1835
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1794632842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)