Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0458
         (336 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11390.1 68416.m01387 DC1 domain-containing protein contains ...    29   0.77 
At5g66960.1 68418.m08442 prolyl oligopeptidase family protein si...    26   5.4  
At5g41220.1 68418.m05009 glutathione S-transferase, putative sim...    26   5.4  
At5g48100.1 68418.m05942 laccase family protein / diphenol oxida...    26   7.2  
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim...    26   7.2  
At4g12330.1 68417.m01951 cytochrome P450 family protein contains...    26   7.2  
At1g26680.1 68414.m03250 transcriptional factor B3 family protei...    26   7.2  
At4g32580.1 68417.m04638 thioredoxin family protein contains Pfa...    25   9.5  
At3g56040.1 68416.m06226 expressed protein                             25   9.5  
At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) n...    25   9.5  

>At3g11390.1 68416.m01387 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -1

Query: 150 SKPSVKTRPRYIGLPICP 97
           SKP VK  PR  G PICP
Sbjct: 97  SKPEVKPHPRPTGNPICP 114


>At5g66960.1 68418.m08442 prolyl oligopeptidase family protein
           similar to OpdB [Treponema denticola] GI:13786054;
           contains Pfam profiles PF00326: prolyl oligopeptidase
           family, PF02897: Prolyl oligopeptidase, N-terminal
           beta-propeller domain
          Length = 792

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 75  PRPFQFHQDRWEDQYS 122
           P+ F FH   WED YS
Sbjct: 46  PQSFTFHDATWEDPYS 61


>At5g41220.1 68418.m05009 glutathione S-transferase, putative
           similar to emb|CAA10662
          Length = 590

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 55  IIDHWWPRDLSSFTR 99
           ++DHW+P DLS   R
Sbjct: 81  VVDHWYPTDLSKRAR 95


>At5g48100.1 68418.m05942 laccase family protein / diphenol oxidase
           family protein similar to  laccase [Pinus
           taeda][GI:13661197]
          Length = 565

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
 Frame = +1

Query: 52  IIIDHWWPRD----LSSFTRTDGKTNIA 123
           II+  WW RD    +  F RT G  N++
Sbjct: 157 IILGEWWKRDVREVVEEFVRTGGAPNVS 184


>At5g41240.1 68418.m05011 glutathione S-transferase, putative
           similar to glutathione S-transferase, GST 10b
           GB:CAA10662 [Arabidopsis thaliana] 37349.
          Length = 591

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 55  IIDHWWPRDLS 87
           ++DHW+P DLS
Sbjct: 81  VVDHWYPNDLS 91


>At4g12330.1 68417.m01951 cytochrome P450 family protein contains
           Pfam profile:PF00067 cytochrome p450
          Length = 518

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 162 VIGVSKPSVKTRPRY-IGLPICPGETGKVSGPPVINNDKKNILVFRV 25
           ++ + K +++  P   + +P CP ET  + G  + N+ K  I V+ +
Sbjct: 368 ILSIMKETLRLHPALPLLIPRCPSETTVIGGYTIPNDSKVFINVWAI 414


>At1g26680.1 68414.m03250 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 920

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 316 YYDNVYATKYYHIQVLSNAIRVRLREFRTRFQLNNKFTLIFNHFKK 179
           Y D +Y  + +   V SN +  R  E   + +   K TL+  HFKK
Sbjct: 447 YKDQLYLPRNF---VSSNFLDKRCSEIVLKNERGEKRTLVLKHFKK 489


>At4g32580.1 68417.m04638 thioredoxin family protein contains Pfam
           profile: PF00085 Thioredoxin
          Length = 160

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = -1

Query: 198 FLTILRNRKTIPVI-GVSKPSVKTRPRYIGLPICPGETGKVSGPPVINNDKKN 43
           +    ++ KT+  + G    S+  +   +   I P   G  +GP ++   KKN
Sbjct: 77  YFVFFKDGKTVDTLEGADPSSLANKVGKVAGSITPASLGLAAGPTILETVKKN 129


>At3g56040.1 68416.m06226 expressed protein
          Length = 883

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 125 GRVLTDGLLTPITGIVFLFLKMVKNQC 205
           GR L +GL+  +    FL+ K+   QC
Sbjct: 338 GRTLLEGLIRDLQAREFLYFKLYGKQC 364


>At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1)
           nearly identical to retinoblastoma-related protein
           [Arabidopsis thaliana] GI:8777927; contains Pfam
           profiles: PF01858 retinoblastoma-associated protein A
           domain, PF01857 retinoblastoma-associated protein B
           domain
          Length = 1013

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 102 CPGETGKVSGPPVINNDKKNILVFR 28
           CPG+ G +  P  +  D ++ILV R
Sbjct: 656 CPGQNGGIRSPKRLCTDYRSILVER 680


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,059,694
Number of Sequences: 28952
Number of extensions: 130354
Number of successful extensions: 247
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)