Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0456
         (295 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   0.33 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   1.8  
SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    24   5.3  
SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual    23   7.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    23   7.1  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    23   9.3  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    23   9.3  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    23   9.3  

>SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 27.9 bits (59), Expect = 0.33
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -2

Query: 204 HLEK*VLSSIVQ*LPYPLN*NAWYLSILLPLPVPL 100
           H+++ +L S VQ  PY  N    YL IL PLP P+
Sbjct: 74  HVQQ-ILLSAVQPYPYDKNLMFVYLVILTPLPHPM 107


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 242 DWAEINNIYKLLTR 283
           DW E N+IYKL+ R
Sbjct: 311 DWNEFNDIYKLIIR 324


>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 232 RHHQRKCRYAPREMSSQF 179
           RHHQR C   PR    +F
Sbjct: 177 RHHQRLCELLPRVSVLEF 194


>SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 257

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 294 VCHIRVSSLYILFISAQSEPIDIINVN 214
           VCH+   S+Y    SA  +P+D++N +
Sbjct: 110 VCHVH--SIYGKAFSALGKPLDMLNTD 134


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 102 LQS*RLTVSFLYSFLSAASRNSCYP 28
           L+S +L+ + LYS  S   RN+ YP
Sbjct: 358 LESLQLSAALLYSTFSKKWRNTGYP 382


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 6/26 (23%), Positives = 16/26 (61%)
 Frame = -3

Query: 80   LASCIHFCQQPAGTAAIHASSHLPSF 3
            +++C+  C+   G+ ++  S + P+F
Sbjct: 1985 MSTCLQLCKIMGGSVSVEVSQNNPTF 2010


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -2

Query: 123 LLPLPVPLQS 94
           +LPLPVPLQS
Sbjct: 260 VLPLPVPLQS 269


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 170 CTIELRTHFSRCVAAFTLMMSMGSDWAE 253
           C +E + H S CVA F   +S  S+  E
Sbjct: 69  CVLEQK-HLSECVAPFVWTLSSSSNERE 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,057,480
Number of Sequences: 5004
Number of extensions: 16020
Number of successful extensions: 31
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)