Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0456
         (295 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0095 - 16575938-16576585,16577028-16577219,16577294-165773...    26   4.6  
10_08_0406 - 17688069-17690643,17691065-17691132                       26   6.1  
09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784     25   8.0  
05_03_0488 - 14651532-14652265,14652404-14653988                       25   8.0  
04_04_0844 - 28637393-28638118,28638206-28638283,28638431-286386...    25   8.0  

>06_03_0095 -
           16575938-16576585,16577028-16577219,16577294-16577392,
           16577496-16577618,16577717-16577929,16578143-16578251,
           16578339-16578427,16578604-16578880,16578974-16579084,
           16579160-16580508,16581218-16581631
          Length = 1207

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 271 FIYIVYLGPVGAHRHHQRKCRYAPREMSSQFYSTMIALPFKL 146
           F  +VY+      RH +   RY P E+S+  YS +  +P  L
Sbjct: 43  FSRVVYVNE--PDRHEEEGFRYQPNEVSTTKYSLVTFIPKSL 82


>10_08_0406 - 17688069-17690643,17691065-17691132
          Length = 880

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 294 VCHIRVSSLYILFISAQSEPI 232
           +C +  + +YILFIS+Q EP+
Sbjct: 494 LCLLLGTVVYILFISSQGEPV 514


>09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784
          Length = 773

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 129 SILLPLPVPLQS*RLTVSFLYSFLSAASR-NSCYPC 25
           +IL+PLP+ ++  R ++ FL  FL+        +PC
Sbjct: 313 AILIPLPLQIKRCRKSIIFLSLFLADIDECQDAHPC 348


>05_03_0488 - 14651532-14652265,14652404-14653988
          Length = 772

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 144 NAWYLSILLPLPVPLQS*RL-TVSFLYSF 61
           NA YL  LLP PVP  + R+ + +F Y F
Sbjct: 68  NASYLDPLLPSPVPYMTARIFSSNFTYWF 96


>04_04_0844 -
           28637393-28638118,28638206-28638283,28638431-28638607,
           28639124-28639537
          Length = 464

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 241 GAHRHHQRKCRYAPREMSSQFYSTMIALPFK 149
           G+H HH   C     E  S+ Y+TM   P K
Sbjct: 283 GSHHHHS-SCSSMTSEQKSRSYATMPESPSK 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,770,780
Number of Sequences: 37544
Number of extensions: 100553
Number of successful extensions: 205
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)