Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0456
         (295 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17106| Best HMM Match : FYVE (HMM E-Value=5e-17)                    26   6.0  
SB_35563| Best HMM Match : Keratin_B2 (HMM E-Value=3.3)                25   8.0  

>SB_17106| Best HMM Match : FYVE (HMM E-Value=5e-17)
          Length = 289

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 244 VGAHRHHQRKCRYAPREMSSQFYSTMIALPFK 149
           VG  +HH RKC  A  +  S+  ST+  + F+
Sbjct: 195 VGVRQHHCRKCGRAVCQSCSEKQSTLPIMGFE 226


>SB_35563| Best HMM Match : Keratin_B2 (HMM E-Value=3.3)
          Length = 138

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 162 PYPLN*NAWYLSILLP 115
           PYPL  N  YL+++LP
Sbjct: 9   PYPLRRNGGYLNVILP 24


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,909,140
Number of Sequences: 59808
Number of extensions: 117376
Number of successful extensions: 253
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 326952314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)