Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0456
         (295 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical pr...    27   1.8  
AL161712-2|CAC70128.1|  313|Caenorhabditis elegans Hypothetical ...    25   9.4  

>Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical
           protein K07C5.4 protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 20  SWHG*QLFRLAADRNEYKKLTVNLQD 97
           S+H  +LFRLA D+ +Y +L V + D
Sbjct: 197 SYHYPELFRLAPDQYKYSRLAVAILD 222


>AL161712-2|CAC70128.1|  313|Caenorhabditis elegans Hypothetical
           protein Y66D12A.3 protein.
          Length = 313

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 285 IRVSSLYILFISAQSEPIDIINVNAAT 205
           +RV+  Y ++   Q+EP+DII  +A++
Sbjct: 183 VRVAFTYKMYAQFQNEPVDIIIRSASS 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,861,504
Number of Sequences: 27780
Number of extensions: 89879
Number of successful extensions: 150
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)