Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0456
         (295 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   1.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   1.8  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   3.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   4.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                19   9.6  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 58  QK*IQEANGQPSRLKRHWKRKK 123
           +K I+  + + S+LKR+W++ K
Sbjct: 17  KKFIRHQSDRYSKLKRNWRKPK 38


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 78   SFLYSFLSAASRNSCYPCQ 22
            SF  SFL  +S +SC P Q
Sbjct: 957  SFYSSFLYKSSESSCNPDQ 975


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 256 YLGPVGAHRHHQRK 215
           Y+    AH HHQ++
Sbjct: 91  YVSAAAAHHHHQQQ 104


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 52  SQPEQLLSMPARIYL 8
           ++P Q+ S PAR+ L
Sbjct: 613 TEPHQIFSFPARLSL 627


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 120 LPLPVPLQS*RLTVSFLYSFLSAASRNSCYPCQL 19
           LPL  P Q   + V   Y F+  +SR    P QL
Sbjct: 230 LPLLCPAQGFPVPVHRWYKFIEGSSRRQ--PVQL 261


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -1

Query: 253 LGPVGAHRHHQ 221
           +GP   H HHQ
Sbjct: 347 MGPPHHHHHHQ 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,632
Number of Sequences: 438
Number of extensions: 1303
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5994288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)