Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0456
         (295 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta...    32   0.076
At1g04130.1 68414.m00402 tetratricopeptide repeat (TPR)-containi...    28   1.2  
At1g53200.1 68414.m06030 expressed protein                             26   5.0  

>At4g28470.1 68417.m04073 26S proteasome regulatory subunit, putative
            contains Pfam domain PF01851: Proteasome/cyclosome repeat
          Length = 1103

 Score = 31.9 bits (69), Expect = 0.076
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = -1

Query: 268  IYIVYLGPVGAHRHHQRKCRYAPREMSSQFYS--TMIALPFKLKRMVPIYXXXXXXXXSI 95
            + IV     GAHR   R C Y    ++SQ +   T +A+P  L  +V +          I
Sbjct: 838  VLIVLSHNAGAHR--SRVCAYGKGSLNSQSFPLRTALAMPTALAGIVTLLHACLDMKSII 895

Query: 94   LKVDR*LLVFISVSSQPEQLLSMPARIYLVS 2
            L     +L F+ ++ QP  +L++   +  +S
Sbjct: 896  LGKYHYVLYFLVLAMQPRMMLTVDQSLKPIS 926


>At1g04130.1 68414.m00402 tetratricopeptide repeat (TPR)-containing
           protein contains non-consensus donor splice site AT at
           exon 4 and acceptor splice site at exon5; Contains
           similarity to serine/threonine protein phosphatase
           gb|X83099 from S. cerevisiae, SP|O95801
           Tetratricopeptide repeat protein 4 Homo sapiens;
           contains Pfam profile PF00515: TPR Domain
          Length = 360

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 140 AFQFKG*GNHCTIELRTHFSRCVAAFTLMMSMG 238
           A +FK  GN C  + + H+S  +  +T  +S G
Sbjct: 31  AIEFKEEGNECVRKGKKHYSEAIDCYTKAISQG 63


>At1g53200.1 68414.m06030 expressed protein
          Length = 613

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
 Frame = -1

Query: 268 IYIVYLGPVGAHRHHQRK-------CRYAPREMSSQFYSTMIAL 158
           IY  ++G +G     +R        C +   EM+++ YST+I+L
Sbjct: 139 IYDTWIGQIGKQHKEERLLVWYEQICHFIEHEMNNEAYSTVISL 182


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,430,440
Number of Sequences: 28952
Number of extensions: 79795
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 271185840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)