Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0453
(520 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49480.1 68414.m05546 transcriptional factor B3 family protei... 31 0.47
At3g29033.1 68416.m03629 glycine-rich protein 30 0.81
At2g05510.1 68415.m00583 glycine-rich protein 30 0.81
At3g62700.1 68416.m07043 glutathione-conjugate transporter, puta... 30 1.1
At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4... 30 1.1
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil... 29 1.4
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil... 29 1.9
At4g22450.1 68417.m03243 hypothetical protein 28 3.3
At1g72880.2 68414.m08430 acid phosphatase survival protein SurE,... 28 4.3
At1g72880.1 68414.m08429 acid phosphatase survival protein SurE,... 28 4.3
At5g39770.1 68418.m04817 repair endonuclease family protein cont... 27 5.7
At4g16530.1 68417.m02502 expressed protein contains Pfam profile... 27 5.7
At4g10640.1 68417.m01738 calmodulin-binding family protein conta... 27 5.7
At3g16060.1 68416.m02030 kinesin motor family protein similar to... 27 5.7
At2g28970.1 68415.m03524 leucine-rich repeat protein kinase, put... 27 5.7
At2g05530.1 68415.m00585 glycine-rich protein 27 5.7
At5g64220.1 68418.m08067 calmodulin-binding protein similar to a... 27 7.6
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 27 7.6
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 27 7.6
At1g80530.1 68414.m09439 nodulin family protein similar to nodul... 27 7.6
>At1g49480.1 68414.m05546 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 226
Score = 31.1 bits (67), Expect = 0.47
Identities = 17/71 (23%), Positives = 29/71 (40%)
Frame = +2
Query: 107 SVTPVLQEDTSPVSPVTDKEDDCRKDGPSPELENGGDRKGDSQSRYRRFVAAAEAHRTVI 286
++ +E + +P K+ +K P+PE N GD +F +A A + +
Sbjct: 48 AIQSFFKESKAEETPKVLKKRGRKKKNPNPEEVNSSTPGGDDSENRSKFYESASARKRTV 107
Query: 287 AAEALSLIVKA 319
AE V A
Sbjct: 108 TAEERERAVNA 118
>At3g29033.1 68416.m03629 glycine-rich protein
Length = 167
Score = 30.3 bits (65), Expect = 0.81
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 376 GFQNRQYDGYQ-NRHANRTGGDGYYGNGDVSEGAH 477
G+Q DGYQ N N G GY G G+V+ G +
Sbjct: 95 GYQADYADGYQGNLAGNPPGSGGYQGIGNVNSGGY 129
>At2g05510.1 68415.m00583 glycine-rich protein
Length = 127
Score = 30.3 bits (65), Expect = 0.81
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 391 QYDGYQNRHANRTGGDGYYGNGDVSEGAHHAENG 492
Q +GY H GG G+YG G G H+ G
Sbjct: 39 QPEGYHGGHGGH-GGGGHYGGGGHGHGGHNGGGG 71
>At3g62700.1 68416.m07043 glutathione-conjugate transporter,
putative similar to glutathione-conjugate transporter
AtMRP4 GI:2959767 from [Arabidopsis thaliana]
Length = 1539
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/75 (20%), Positives = 34/75 (45%)
Frame = -2
Query: 354 VITTLSAPIAVTALTIRESASAAMTVRCASAAATKRLYRLWESPLRSPPFSNSGLGPSFL 175
+I S P+ ++ALT + + + + T ++++ + P+R+ P S L + +
Sbjct: 549 IIVLWSTPVLISALTFTTAVFLGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMI 608
Query: 174 QSSSLSVTGETGEVS 130
L + E+S
Sbjct: 609 SLGRLDAYMMSRELS 623
>At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4)
identical to AtMRP4 GI:2959767 from [Arabidopsis
thaliana]
Length = 1516
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/65 (20%), Positives = 31/65 (47%)
Frame = -2
Query: 354 VITTLSAPIAVTALTIRESASAAMTVRCASAAATKRLYRLWESPLRSPPFSNSGLGPSFL 175
+I S P+ ++ALT + + + + + T ++++ + P+R+ P S L + +
Sbjct: 551 IIVLWSTPVLISALTFATALALGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMI 610
Query: 174 QSSSL 160
L
Sbjct: 611 SLGRL 615
>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profile: PF00076 RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to
ras-GTPase-activating protein (GAP<120>)
SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
Length = 488
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +1
Query: 370 REGFQNRQYDGYQNRHANRTGGDGYYGNGDVSEGAH-HAENGRERYG 507
R G+ ++GY N N GG NGD + NGR R G
Sbjct: 420 RGGYGRTDFNGYGNNRGNNRGGYANRANGDGGGFPRANGNNGRVRRG 466
>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 428
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +1
Query: 367 NREGFQNRQYDGYQNRHANRTGGDGYYGNGDVSEGAHHAENGRERYGE 510
N G++N DGY+ R GG GY NG SE + NG G+
Sbjct: 373 NDNGYRN---DGYRPRGNGSNGGRGYGRNG--SERRGESRNGEAHNGD 415
>At4g22450.1 68417.m03243 hypothetical protein
Length = 457
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 388 RQYDGYQNRHANRTGGDGYYGNGDV 462
+QY+G++ NRT G GYY NG +
Sbjct: 72 KQYEGFKKLTHNRT-GLGYYPNGSI 95
>At1g72880.2 68414.m08430 acid phosphatase survival protein SurE,
putative similar to Swiss-Prot:P36664 acid phosphatase
surE (EC 3.1.3.2) (Stationary-phase survival protein
surE) [Escherichia coli O157:H7]; contains Pfam domain
PF01975: Survival protein SurE
Length = 385
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 388 RQYDGYQNRHANRTGGDGYYGNGDVSEGAHHAENGRE 498
RQY +Q ANR G G + + S GA A+ GR+
Sbjct: 255 RQYPSWQAVSANRHPGAGNFMSNQQSLGAQLAQLGRD 291
>At1g72880.1 68414.m08429 acid phosphatase survival protein SurE,
putative similar to Swiss-Prot:P36664 acid phosphatase
surE (EC 3.1.3.2) (Stationary-phase survival protein
surE) [Escherichia coli O157:H7]; contains Pfam domain
PF01975: Survival protein SurE
Length = 385
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 388 RQYDGYQNRHANRTGGDGYYGNGDVSEGAHHAENGRE 498
RQY +Q ANR G G + + S GA A+ GR+
Sbjct: 255 RQYPSWQAVSANRHPGAGNFMSNQQSLGAQLAQLGRD 291
>At5g39770.1 68418.m04817 repair endonuclease family protein
contains Pfam PF02732 : ERCC4 domain; similar to MUS81
endonuclease (GI:16755674) [Mus musculus]; similar to
repair endonuclease (TIGR:At5g41150) [Arabidopsis
thaliana]
Length = 1242
Score = 27.5 bits (58), Expect = 5.7
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Frame = -2
Query: 453 VAIISVATGTVRMPIL-VAVILSVLKSFPVRSVLVITTLSAPIAVTALTIRESASAAMTV 277
VA++ V + L V V+L V+ V +VL + + +AV + + A+A M V
Sbjct: 545 VAVLQVVAALQVVGALQVVVVLQVVAPLQVVAVLQVVAVLQVVAVLQVAVILWATARMLV 604
Query: 276 ------RCASAAATKRLYRLWESPLRSPPFSNSGLGPSFLQSSSLSVT 151
R SAA+ R++ W S LG +F S SL +T
Sbjct: 605 NESYDKRRWSAASGLRVFWDWSSWRLLSILIFMRLGGAFSASKSLDLT 652
>At4g16530.1 68417.m02502 expressed protein contains Pfam profile
PF04510: Family of unknown function (DUF577)
Length = 774
Score = 27.5 bits (58), Expect = 5.7
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 80 ALVATLVHVSVTPVLQEDTSPVSPVTDKEDDCRKDGPSPE--LENGGDRKGD-SQSRYR 247
A+VA V V T V+ E P T+KE+D + G + E ++ R GD + +YR
Sbjct: 630 AVVAAAV-VKSTAVVVESVESEEPKTEKEEDEERSGCNGESSAKDAAARAGDPDEEKYR 687
>At4g10640.1 68417.m01738 calmodulin-binding family protein contains
IQ calmodulin-binding motif, Pfam:PF00612
Length = 423
Score = 27.5 bits (58), Expect = 5.7
Identities = 20/63 (31%), Positives = 24/63 (38%)
Frame = -2
Query: 306 RESASAAMTVRCASAAATKRLYRLWESPLRSPPFSNSGLGPSFLQSSSLSVTGETGEVSS 127
+ A T R A KRL E LRSP F + G S G G++S
Sbjct: 354 KAKARTQSTPRRRPMTAKKRLCYAEEESLRSPSFKSCLWGDHESDYSCCYGDGFAGKISP 413
Query: 126 CRT 118
C T
Sbjct: 414 CST 416
>At3g16060.1 68416.m02030 kinesin motor family protein similar to
kinesin heavy chain member 2 GB:NP_032468 from [Mus
musculus]; contains Pfam profile PF00225: Kinesin motor
domain
Length = 684
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 388 RQYDGYQNRHANRTGGDGYYGNGDVSEGAHHAENGRERYGEAT 516
+ + N + GG G G G + G +A+ G E +GE T
Sbjct: 39 QHFQSSANDYGYYAGGQG--GGGQAARGYQNAQRGNEFFGEPT 79
>At2g28970.1 68415.m03524 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 786
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 225 PLRSPPFSNSGLGPSFLQSSSLSVTGETGEV 133
P+ P+S+ G +F S+ TGE+G V
Sbjct: 33 PIEESPYSDPSTGLTFTSDSTFIQTGESGRV 63
>At2g05530.1 68415.m00585 glycine-rich protein
Length = 115
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 373 EGFQNRQYDGYQNRHANRTGGDGYYGNGDVSEGAHHAENG 492
E Q QY+G + GG GY G G + G ++ G
Sbjct: 34 ETVQPDQYNGGHGGNGGYNGGGGYNGGGGHNGGGYNGGGG 73
>At5g64220.1 68418.m08067 calmodulin-binding protein similar to
anther ethylene-upregulated calmodulin-binding protein
ER1 GI:11612392 from[Nicotiana tabacum]
Length = 1050
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 397 DGYQNRHANRTGGDGYYGNGDVSEGAHHAENGRERY 504
DG+ + H NR G +GDV EN RY
Sbjct: 225 DGWTSAHGNRVKGSNSQRSGDVPAWDASFENSLARY 260
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +2
Query: 161 KEDDCRKDGPSPE--LENGGDRKGDSQSRYRR 250
K+DD R +G SPE + DR+ S S YRR
Sbjct: 167 KDDDSRGNGYSPERRRDRSPDRRRRSPSPYRR 198
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +2
Query: 161 KEDDCRKDGPSPE--LENGGDRKGDSQSRYRR 250
K+DD R +G SPE + DR+ S S YRR
Sbjct: 167 KDDDSRGNGYSPERRRDRSPDRRRRSPSPYRR 198
>At1g80530.1 68414.m09439 nodulin family protein similar to
nodulin-like protein [Arabidopsis thaliana] GI:3329368,
nodule-specific protein Nlj70 [Lotus japonicus]
GI:3329366
Length = 561
Score = 27.1 bits (57), Expect = 7.6
Identities = 26/91 (28%), Positives = 45/91 (49%)
Frame = -2
Query: 450 AIISVATGTVRMPILVAVILSVLKSFPVRSVLVITTLSAPIAVTALTIRESASAAMTVRC 271
A + V T + IL +++ VL + V +L+++ L+ PI +T R +A ++
Sbjct: 222 AYLVVTTVLSEVFILPSILKYVLVAIMV--LLLLSPLAVPIKMTLF--RSNAKSSPLGSS 277
Query: 270 ASAAATKRLYRLWESPLRSPPFSNSGLGPSF 178
+ A + + E PL +P S S LGP F
Sbjct: 278 DNLAKEEGTH---EEPLLTPSTSASNLGPIF 305
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,151,575
Number of Sequences: 28952
Number of extensions: 205950
Number of successful extensions: 1068
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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