Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0452
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0723 + 19736958-19737107,19737979-19738480,19738911-197390...    29   2.8  
04_03_0520 - 16748646-16748741,16748821-16748895,16749260-167493...    28   8.4  

>09_04_0723 +
           19736958-19737107,19737979-19738480,19738911-19739061,
           19739659-19739766,19739789-19739818,19739894-19740303,
           19740797-19740882,19740989-19741058,19741413-19741585,
           19741644-19741725,19742131-19742288
          Length = 639

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 596 SEVSRDTRIERSSFRLISEGIVYIFFK 516
           SEV R T I+RSS RL+ E + Y   K
Sbjct: 211 SEVERRTEIKRSSLRLLDEHLAYSLTK 237


>04_03_0520 -
           16748646-16748741,16748821-16748895,16749260-16749362,
           16749635-16749783,16750986-16751110,16751320-16751389
          Length = 205

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 553 RKELRSIRVSLDTSEVFSSL**FTGGRTSWEVRTGRYHHPAYFPP 687
           R+ L +I+ +LD SE    +   T    +W  RT   +H +Y PP
Sbjct: 47  RRTLHTIKDNLDKSENRIEVVLLTRLDLTWRKRTWEINHTSYSPP 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,192,103
Number of Sequences: 37544
Number of extensions: 299679
Number of successful extensions: 524
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)