Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0452
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   1.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.2  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   5.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.7  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 652 TGRYHHPAYFPP 687
           TGR H PA FPP
Sbjct: 398 TGREHDPAKFPP 409


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 234 VGQSNNIIVSPSVLVTCAK 178
           +GQ + +++ PS+ +T AK
Sbjct: 183 IGQKHKLLIGPSIRITPAK 201


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 220 ITLTYISNV*TNDFFLERSSLSRVVKGS*TEKI 318
           I LTY  N+  N+  +   +  +V KG+ T +I
Sbjct: 45  IYLTYAKNILPNNISIAGQNTYKVAKGAFTGEI 77


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 644 SQEVLPPVNYYK 609
           SQ+ LPPV+Y K
Sbjct: 263 SQQSLPPVSYVK 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,635
Number of Sequences: 438
Number of extensions: 4368
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)