Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0450
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31840| Best HMM Match : RuvA_N (HMM E-Value=5.6)                    29   2.8  
SB_28264| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)               28   6.5  
SB_24073| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_31840| Best HMM Match : RuvA_N (HMM E-Value=5.6)
          Length = 895

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -1

Query: 470 EQYRKCRCELYRSSPGSRCLLASFVQIPSASGTKDVVT*FTAHHVDCNSLCSRNCYYSS 294
           E+  +CR  +   +     LL S+ Q+ SA   ++++  F   H D N   SR C  +S
Sbjct: 391 EKSSQCRELVIHQARSWELLLPSYKQVYSALHPRNLLKIFIKPHADANCSLSRGCSEAS 449


>SB_28264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +2

Query: 200 FPLSIDRKSLGP--TFRYIMKYNKI*YTHFTLYMNYN 304
           F L+++  +L P  T  +++ Y  I YT+F L M+YN
Sbjct: 17  FILTVNLNALAPIVTMPFLVTYAAIEYTYFKLAMSYN 53


>SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)
          Length = 936

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 178 SEVLRCRFPTINRPKIVRPDVPVHNE 255
           S +L+ +FP + +PKI R  VP  +E
Sbjct: 521 SNILKTKFPPLEQPKISRHQVPCGDE 546


>SB_24073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 410 LASFVQIPSASGTKDVVT*FTAHHVDCNSLCSRNCYYSSY 291
           L  F +I    G +DV+     HH  C+ LC RN +  +Y
Sbjct: 752 LGEFTEILEKIGRRDVIHEIENHHRTCH-LCIRNSFDFTY 790


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,120,453
Number of Sequences: 59808
Number of extensions: 421280
Number of successful extensions: 819
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)