Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0450
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    25   0.71 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   5.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.0  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   6.6  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   8.7  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 281 FTLYMNYNNSYGYINCYN 334
           ++ Y NYNN+Y   N YN
Sbjct: 324 YSNYNNYNNNYNNYNNYN 341


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -2

Query: 94  KTCIFYFVSCFIYIFSVV*FTSVCNYS 14
           K    Y V CF+++F+ +   +  NY+
Sbjct: 302 KAIDIYLVMCFVFVFAALLEYAAVNYT 328


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 6/25 (24%), Positives = 14/25 (56%)
 Frame = +3

Query: 522 CSHSIKLRCINIRNWTNH*KVRSFP 596
           C  S+  + I+++ W ++  +  FP
Sbjct: 322 CMRSVDAKTISVQQWNSYWGILGFP 346


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +3

Query: 135  IKYKWNGLNVGNRLKRSLEMSISHYQSTENR*ARRSGT 248
            +  +W    +G+R++R ++ S  + Q+ E +  R   T
Sbjct: 1631 VALRWRSRYLGDRMQRPMKESQENQQNAETQRERYYAT 1668


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 563 LDEPLKGPQLSVNISRTRGHGEAHSLSQ 646
           LDE +K P  SV+ + +   GE  SL++
Sbjct: 482 LDEAVKSPLGSVSSTESTCSGEVASLTE 509


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = +3

Query: 135  IKYKWNGLNVGNRLKRSLEMSISHYQSTENR*ARRSGT 248
            +  +W    +G+R++R ++ S  + Q+ E +  R   T
Sbjct: 1627 VALRWRSRYLGDRMQRPMKESQENQQNAETQRERYYAT 1664


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 6/25 (24%), Positives = 14/25 (56%)
 Frame = +3

Query: 522 CSHSIKLRCINIRNWTNH*KVRSFP 596
           C  S+  + I+++ W ++  +  FP
Sbjct: 322 CMRSVDAKTISVQQWNSYWGILGFP 346


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 260 NKI*YTHFTLYMNYNNSYGYIN 325
           NK  + +     NYNN Y Y N
Sbjct: 87  NKTIHNNNNYKYNYNNKYNYNN 108


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 278 HFTLYMNYNNSYGYIN 325
           +++ Y NYNN+Y   N
Sbjct: 90  NYSNYNNYNNNYNNYN 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,459
Number of Sequences: 438
Number of extensions: 4663
Number of successful extensions: 34
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)