Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0449
         (699 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q864S8 Cluster: Breast cancer type 2 susceptibility pro...    35   2.2  
UniRef50_Q9DX73 Cluster: Long-distance movement protein; n=3; ss...    33   6.7  

>UniRef50_Q864S8 Cluster: Breast cancer type 2 susceptibility
           protein homolog; n=7; Euteleostomi|Rep: Breast cancer
           type 2 susceptibility protein homolog - Felis silvestris
           catus (Cat)
          Length = 3372

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
 Frame = +3

Query: 243 DDGVDNDRHY-QGQDA*TQEREQGDSLRACHVKITSTHSTLHHLIPTVCIQEHNLGN--- 410
           D  V N + +  G D  ++E     +  +CH+ ++  + T    +P +CI   +  N   
Sbjct: 358 DSNVTNQKPFGNGSDKISKEVVLSSASESCHLTLSGLNGTHMEKLPLLCISSCDQNNSEK 417

Query: 411 ---IVDQLCTSLQDIKDHEDSVIGMPTCS--IEQAEAVVN 515
                ++ CT+   ++D    + G+P C+  I   E VVN
Sbjct: 418 DLITTEKECTNFIILEDSLPQISGVPKCTEKILNEEIVVN 457


>UniRef50_Q9DX73 Cluster: Long-distance movement protein; n=3; ssRNA
           positive-strand viruses, no DNA stage|Rep: Long-distance
           movement protein - Pea enation mosaic virus (PEMV)
          Length = 236

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 293 TRERAG-R*PAGLPRQDHFNTLHTSSSDTYSLHSGTQFRKHC*SAVY*SPGHKRSRR 460
           +RER G   P+  P+      L T +   +  H GT FR+   S+V+ S   +R+RR
Sbjct: 49  SRERKGYTHPSPTPKNSRQGQLRTEAVQEHPKHGGTAFRRESGSSVHPSRPRRRARR 105


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 699,535,789
Number of Sequences: 1657284
Number of extensions: 13891556
Number of successful extensions: 31854
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 30843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31848
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)