Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0449
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    31   0.21 
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    30   0.37 
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    27   2.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   3.4  
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    25   7.9  
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   7.9  

>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 393 EHNLGNIVDQLCTSLQD-IKDHEDSVIGMPTCSIEQAEAVVNITLHFQL*RKGKSHLCSI 569
           EH +  ++ QL  S  D I D    V+ +    +EQAEA+++  +H      G    C +
Sbjct: 86  EHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQV 145

Query: 570 ICLHL 584
              HL
Sbjct: 146 AVKHL 150


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -3

Query: 667 SSSSNPWTEDNSHCILAVTSSDSLTTPSRWRQIILQR*LLPFLQ 536
           SSS+ P  +     +LA+ +   L  PS   QI  QR +LP LQ
Sbjct: 81  SSSNQPLRQIQFFVLLALVACYQLGVPSTLEQIFKQRNVLPILQ 124


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/78 (23%), Positives = 38/78 (48%)
 Frame = -3

Query: 694 VVLFPQTSYSSSSNPWTEDNSHCILAVTSSDSLTTPSRWRQIILQR*LLPFLQSWKCSVI 515
           V++  +   +SSS      +++   ++   D++ + S W Q++  R     L+S   +V 
Sbjct: 293 VLVLSKDGNASSSGGTENQSANSSSSLMEKDAILSSSSWSQLLYLRCSSCKLKSIPKNVF 352

Query: 514 LTTASACSIEHVGIPMTE 461
           L+  S  S++  G  +TE
Sbjct: 353 LSLQSLVSLDLSGNELTE 370


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +3

Query: 360  LHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSVIGMPTCSIEQA 500
            L+ LI  + I +HN  N    L  ++ + K H   ++G+    +++A
Sbjct: 2380 LYSLIRLIFISQHNGKNPYYDLIVNISENKQHRADIVGLLLYILQEA 2426


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 447 LCPGD*YTADQQCFLNCV 394
           L PGD  T DQ+  +NCV
Sbjct: 137 LLPGDLVTVDQKSVMNCV 154


>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 333 VKITSTHSTLHHLIPTVCIQEHNLGNIVDQL 425
           +K+T+ H T   ++  V   EHNL   ++Q+
Sbjct: 134 LKVTNNHITHATIVGQVSGSEHNLSTAIEQV 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,528
Number of Sequences: 5004
Number of extensions: 59528
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)