Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0449
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0498 + 4152729-4152820,4153316-4153425,4153840-4153877,415...    30   2.0  
05_01_0231 - 1730428-1730817                                           29   3.5  
05_01_0582 - 5220614-5220781,5220866-5220930,5221149-5221332           28   8.2  

>05_01_0498 +
           4152729-4152820,4153316-4153425,4153840-4153877,
           4154335-4154433,4154461-4157475
          Length = 1117

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +3

Query: 396 HNLGNIVDQL--CTSLQDIKDHEDSVIGMPTCSIEQAEAVVNITLH 527
           ++LG  +D L  CTSL+ I    +S+ G    +I++   +VN+ LH
Sbjct: 485 NDLGGSIDALLSCTSLKSIDVSNNSLTGEIPPAIDRLPGLVNLALH 530


>05_01_0231 - 1730428-1730817
          Length = 129

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 309 GDSLRACHVKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQDIKD 452
           GD  R C  K+   +  LH L+  V   +H  G I+ +  +SLQ+I D
Sbjct: 80  GDRNRLCGEKLKKRY--LHELLRDVEPDDHKHGGILQRCKSSLQEIVD 125


>05_01_0582 - 5220614-5220781,5220866-5220930,5221149-5221332
          Length = 138

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 446 KRSRRFCHRYANVFYRTSRGCRQYYAAFPALKKGQESPLQYYLPP 580
           KR +RF H Y N  +  +  C     A P  KK    P + + PP
Sbjct: 72  KRGKRFNHSYGNTCHLLTAVCSS--QARPRNKKKGTGPARLFAPP 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,112,192
Number of Sequences: 37544
Number of extensions: 392214
Number of successful extensions: 834
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)