Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0449
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11362| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-32)               33   0.17 
SB_22054| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  

>SB_11362| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-32)
          Length = 382

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
 Frame = +3

Query: 330 HVKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDS--VIGMPTCSIE--- 494
           H+K    HSTL   +  VC     L ++ D  C +  D++ H +S   +   TC+++   
Sbjct: 253 HIKFR--HSTLRPYVCDVCDYRLVLISLFDYSCKTCSDLRRHRESHNAVFSYTCAVQGCA 310

Query: 495 -QAEAVVNITLHFQL*RKGKSHLCSIICLHLLG 590
             A A+  +  HF++  +G   L    C HL G
Sbjct: 311 FSARAMQTLKRHFKITHEG-GELAKYEC-HLCG 341


>SB_22054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = -2

Query: 260 VINTIIAHKSRESILLSPWAVCINRSFVCPSLLIHAYIF----GLLFASVSILDMMHRLT 93
           +  ++  +K+  ++++S W +CI   +VC   ++   +F    G L   + + DM ++ T
Sbjct: 59  IYRSLFTYKNSLTMIISIWIICI--FYVCIFAVLQGPVFYFHAGKLICHIRLHDMAYKNT 116

Query: 92  LNI 84
            NI
Sbjct: 117 WNI 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,747,392
Number of Sequences: 59808
Number of extensions: 484730
Number of successful extensions: 2634
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2634
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)