Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0449
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81130-12|CAB61027.1|  332|Caenorhabditis elegans Hypothetical p...    28   7.4  
Z79695-8|CAB01967.2|  332|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U80843-9|AAB37969.1|  392|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z83106-6|CAB05497.2|  339|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    27   9.8  

>Z81130-12|CAB61027.1|  332|Caenorhabditis elegans Hypothetical
           protein F27D4.1 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
 Frame = +1

Query: 76  IAKILRVKRCIISRIETLANNRPKI*ACISNEGQTKDRFIHTAHGDSKMDSRDLCAMMVL 255
           +AK+  VKR ++++ E L NN P+  A +    Q +  F     G S      +  +   
Sbjct: 68  VAKVNGVKRVLVAQDEKLKNNLPERVAPVILASQKQFNFTAITAGSSAFGRGVIPRVAAK 127

Query: 256 ITTDTIKGRMRKHKRES--RAIACGPATSRSLQHTPHFII*YLQSAF 390
           +   +I      H  +S  R +  G A  +     P  ++ +  ++F
Sbjct: 128 LDVSSISDVTEVHSADSFTRTLYAGNAVKKVKSTAPIKLLTFRGTSF 174


>Z79695-8|CAB01967.2|  332|Caenorhabditis elegans Hypothetical
           protein F27D4.1 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
 Frame = +1

Query: 76  IAKILRVKRCIISRIETLANNRPKI*ACISNEGQTKDRFIHTAHGDSKMDSRDLCAMMVL 255
           +AK+  VKR ++++ E L NN P+  A +    Q +  F     G S      +  +   
Sbjct: 68  VAKVNGVKRVLVAQDEKLKNNLPERVAPVILASQKQFNFTAITAGSSAFGRGVIPRVAAK 127

Query: 256 ITTDTIKGRMRKHKRES--RAIACGPATSRSLQHTPHFII*YLQSAF 390
           +   +I      H  +S  R +  G A  +     P  ++ +  ++F
Sbjct: 128 LDVSSISDVTEVHSADSFTRTLYAGNAVKKVKSTAPIKLLTFRGTSF 174


>U80843-9|AAB37969.1|  392|Caenorhabditis elegans Hypothetical
           protein C32B5.14 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 405 GNIVDQLCTSLQDIKDHEDSVIGMPTCSIEQAEAVVNITL 524
           G I      S+ D++D   S  G+P C +E A  V N+TL
Sbjct: 90  GEIEQDPDESIIDVRDGFLSKKGIPECEMETARLVHNLTL 129


>Z83106-6|CAB05497.2|  339|Caenorhabditis elegans Hypothetical
           protein F22B8.7 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 181 KDRFIHTAHGDSKMDSRDLCAMMVLITTDTIKGRMRK 291
           +D++     GD+ ++    C   VL T D +KG M K
Sbjct: 247 EDKWAEIRIGDAHLECFAPCTRCVLTTVDPVKGEMSK 283


>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
            protein Y26D4A.9 protein.
          Length = 1435

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 34   VHEVRYSLLASDNAIAKILRVKRCIISRIETLA 132
            VH V+ + +  +N I K +  KR ++  I TLA
Sbjct: 1394 VHSVQQNKVVLNNMIGKDVEAKRYVVDNIHTLA 1426


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,551,910
Number of Sequences: 27780
Number of extensions: 349509
Number of successful extensions: 892
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)