Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0449
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)...    30   1.3  
At5g16630.1 68418.m01947 DNA repair protein Rad4 family low simi...    29   3.9  
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ...    29   3.9  
At2g09865.1 68415.m01022 hypothetical protein                          28   5.2  
At3g59380.1 68416.m06622 farnesyltransferase alpha subunit, puta...    28   6.8  
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    28   6.8  
At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal hydrolase-r...    27   9.0  

>At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)
           family protein low similarity to Swift [Xenopus laevis]
           GI:14164561; contains Pfam profiles PF00583:
           acetyltransferase, GNAT family, PF00533: BRCA1 C
           Terminus (BRCT) domain
          Length = 991

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/73 (27%), Positives = 35/73 (47%)
 Frame = -2

Query: 254 NTIIAHKSRESILLSPWAVCINRSFVCPSLLIHAYIFGLLFASVSILDMMHRLTLNIFAI 75
           +T++  K+R + LL  + +C+  +   P     A I     A  +++  +++     F I
Sbjct: 433 STVLRAKARPNSLLKGYDICVGPNIELPIKTSSAIIKS---AGGNVISGVNKGKAKTFRI 489

Query: 74  ALSLASNE*RTSC 36
           ALSLA    R SC
Sbjct: 490 ALSLAHGSVRVSC 502


>At5g16630.1 68418.m01947 DNA repair protein Rad4 family low
           similarity to SP|Q01831 DNA-repair protein complementing
           XP-C cells (Xeroderma pigmentosum group C complementing
           protein) {Homo sapiens}; contains Pfam profile PF03835:
           DNA repair protein Rad4
          Length = 865

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 160 ISNEGQTKDRFIHTAHGDSKMDSRDLCAMMVLITTDTIKGR 282
           ISN     D+ I TA G  K+DS  LC + V    + + G+
Sbjct: 383 ISNSSSVSDQVISTAFGSKKVDS-PLCWLEVYCNGENMDGK 422


>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein similar
           to SP|O59800 Cell cycle control protein cwf5
           {Schizosaccharomyces pombe}, RNA Binding Protein 47
           [Nicotiana plumbaginifolia] GI:9663769; contains Pfam
           profile: PF00076 RNA recognition motif (aka RRM, RBD, or
           RNP domain)
          Length = 481

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 515 YYAAFPALKKGQESPLQYYLPPPA 586
           Y   +P     Q SP+Q+Y PPPA
Sbjct: 404 YQQQYPPNHHHQPSPMQHYAPPPA 427


>At2g09865.1 68415.m01022 hypothetical protein
          Length = 339

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 266 TLSRAGCVNTRERAGR*PAGLPRQDH 343
           TLSR GCV +  R  R PA   R +H
Sbjct: 312 TLSRCGCVASTRRRHRSPAPTSRSEH 337


>At3g59380.1 68416.m06622 farnesyltransferase alpha subunit,
           putative / FTA, putative / protein farnesyltransferase,
           putative similar to farnesyltransferase alpha subunit
           [GI:2246442][Pisum sativum]
          Length = 326

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 360 LHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSV 467
           L+ L  T C     L  ++D LC  L+   +H+DSV
Sbjct: 248 LNVLSRTDCFHGFALSTLLDLLCDGLRPTNEHKDSV 283


>At2g45540.1 68415.m05663 WD-40 repeat family protein /
           beige-related contains Pfam PF02138: Beige/BEACH domain;
           contains Pfam PF00400: WD domain, G-beta repeat (3
           copies)
          Length = 2946

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 24/76 (31%), Positives = 38/76 (50%)
 Frame = -2

Query: 686 FPTNFLFLKLQSLDGRQFALHFGCDFK*QSYDTKQVEADNTAKVTLALSSELEMQRNIDD 507
           F   FL ++  S  GR+ +LHF   FK Q +    +  +++ K  L   +E E++  ID 
Sbjct: 463 FHAQFLVVESGSGKGRKSSLHFTHAFKPQCW--YFIGLEHSCKQGLLGKAESELRLYIDG 520

Query: 506 SLCLFYRTRWHTYDRI 459
           SL   Y +R   + RI
Sbjct: 521 SL---YESRPFDFPRI 533


>At2g27650.1 68415.m03351 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF04780:
           Protein of unknown function (DUF629), PF04781: Protein
           of unknown function (DUF627)
          Length = 1106

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = -2

Query: 257 INTIIAHKSRESILLSPWAVCINRSFVCPSLLIHAYIFGLLFASVSILDMMHRLTL 90
           +N I  HKS    ++    +C+N   +   LLI + I  +  + +S+L+ + RL+L
Sbjct: 626 MNLIREHKSLNDDIVLKSLICLNSVVIFKILLIDSKILLVDNSRISLLNNLTRLSL 681


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,408,509
Number of Sequences: 28952
Number of extensions: 317186
Number of successful extensions: 780
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)